RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-215ENST00000565442 AEBP2Q6ZN18 517 aaPredicted RBP30.41■■■□□ 2.46
CHD9-215ENST00000565442 CHIC1Q5VXU3 224 aa28.64■■■□□ 2.18
CHD9-215ENST00000565442 SENP3Q9H4L4 574 aaPredicted RBP26■■□□□ 1.75
CHD9-215ENST00000565442 PHF23Q9BUL5 403 aaPredicted RBP25.61■■□□□ 1.69
CHD9-215ENST00000565442 FOXD1Q16676 465 aa24.25■■□□□ 1.47
CHD9-215ENST00000565442 MSH5O43196 834 aa22.82■■□□□ 1.24
CHD9-215ENST00000565442 PLPPR3Q6T4P5 718 aa22.77■■□□□ 1.24
CHD9-215ENST00000565442 POTEDQ86YR6 584 aa22.7■■□□□ 1.22
CHD9-215ENST00000565442 PIAS4Q8N2W9 510 aaPredicted RBP22.61■■□□□ 1.21
CHD9-215ENST00000565442 PPP6R1Q9UPN7 881 aa22.46■■□□□ 1.19
CHD9-215ENST00000565442 ADRA2BP18089 450 aa22.38■■□□□ 1.17
CHD9-215ENST00000565442 MAPK8IP2Q13387 824 aaPredicted RBP20.63■□□□□ 0.89
CHD9-215ENST00000565442 DMRT2Q9Y5R5 561 aa20.57■□□□□ 0.88
CHD9-215ENST00000565442 SCAF1Q9H7N4 1312 aaKnown RBP20.5■□□□□ 0.87
CHD9-215ENST00000565442 PPP4R3CPQ6ZMV5 832 aa19.92■□□□□ 0.78
CHD9-215ENST00000565442 DCAF8L1A6NGE4 600 aa19.74■□□□□ 0.75
CHD9-215ENST00000565442 CACNB1Q02641 598 aaPredicted RBP19.73■□□□□ 0.75
CHD9-215ENST00000565442 HOXD11P31277 338 aaPredicted RBP19.71■□□□□ 0.75
CHD9-215ENST00000565442 CNKSR2Q8WXI2 1034 aa19.61■□□□□ 0.73
CHD9-215ENST00000565442 RNF216Q9NWF9 866 aaPredicted RBP19.5■□□□□ 0.71
CHD9-215ENST00000565442 RNF39Q9H2S5 420 aa19.43■□□□□ 0.7
CHD9-215ENST00000565442 C1QBPQ07021 282 aaKnown RBP19.14■□□□□ 0.65
CHD9-215ENST00000565442 DNAJC5BQ9UF47 199 aa19.09■□□□□ 0.65
CHD9-215ENST00000565442 NCBP3Q53F19 620 aaKnown RBP19.08■□□□□ 0.64
CHD9-215ENST00000565442 NPM3O75607 178 aaKnown RBP18.8■□□□□ 0.6
CHD9-215ENST00000565442 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.78■□□□□ 0.6
CHD9-215ENST00000565442 U3KPZ7 1027 aaPredicted RBP18.36■□□□□ 0.53
CHD9-215ENST00000565442 KCNA4P22459 653 aa18.21■□□□□ 0.51
CHD9-215ENST00000565442 SPINK5Q9NQ38 1064 aaPredicted RBP18.17■□□□□ 0.5
CHD9-215ENST00000565442 CAPN15O75808 1086 aa18.16■□□□□ 0.5
CHD9-215ENST00000565442 DSG3P32926 999 aa18.1■□□□□ 0.49
CHD9-215ENST00000565442 SLC4A2P04920 1241 aa18.02■□□□□ 0.48
CHD9-215ENST00000565442 APLP2Q06481 763 aa17.84■□□□□ 0.45
CHD9-215ENST00000565442 TRHP20396 242 aaPredicted RBP17.8■□□□□ 0.44
CHD9-215ENST00000565442 ZNF219Q9P2Y4 722 aaPredicted RBP17.77■□□□□ 0.44
CHD9-215ENST00000565442 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.75■□□□□ 0.43
CHD9-215ENST00000565442 HNRNPUL2Q1KMD3 747 aaKnown RBP17.75■□□□□ 0.43
CHD9-215ENST00000565442 POTEHQ6S545 545 aa17.74■□□□□ 0.43
CHD9-215ENST00000565442 ABCB7O75027 752 aa17.72■□□□□ 0.43
CHD9-215ENST00000565442 SAMD1Q6SPF0 538 aaPredicted RBP17.64■□□□□ 0.41
CHD9-215ENST00000565442 MYCNP04198 464 aaPredicted RBP17.41■□□□□ 0.38
CHD9-215ENST00000565442 RBM42Q9BTD8 480 aaKnown RBP17.31■□□□□ 0.36
CHD9-215ENST00000565442 POLA2Q14181 598 aa17.26■□□□□ 0.35
CHD9-215ENST00000565442 SLC4A1APQ9BWU0 796 aaKnown RBP17.14■□□□□ 0.33
CHD9-215ENST00000565442 FOXD4L1Q9NU39 408 aa17.08■□□□□ 0.32
CHD9-215ENST00000565442 CHRDL2Q6WN34 429 aa17.02■□□□□ 0.32
CHD9-215ENST00000565442 ATF5Q9Y2D1 282 aaPredicted RBP17.01■□□□□ 0.31
CHD9-215ENST00000565442 ZBTB12Q9Y330 459 aaPredicted RBP16.92■□□□□ 0.3
CHD9-215ENST00000565442 AKT1S1Q96B36 256 aa16.84■□□□□ 0.29
CHD9-215ENST00000565442 OSCARQ8IYS5 282 aa16.74■□□□□ 0.27
CHD9-215ENST00000565442 ZBTB22O15209 634 aa16.73■□□□□ 0.27
CHD9-215ENST00000565442 REM2Q8IYK8 340 aaPredicted RBP16.67■□□□□ 0.26
CHD9-215ENST00000565442 ATXN8OSP0DMR3 200 aa16.57■□□□□ 0.24
CHD9-215ENST00000565442 PIP4P2Q8N4L2 257 aa16.55■□□□□ 0.24
CHD9-215ENST00000565442 SP7Q8TDD2 431 aaPredicted RBP16.52■□□□□ 0.24
CHD9-215ENST00000565442 PITPNM1O00562 1244 aa16.51■□□□□ 0.23
CHD9-215ENST00000565442 FXR2P51116 673 aaKnown RBP eCLIP16.41■□□□□ 0.22
CHD9-215ENST00000565442 FBLN2P98095 1184 aa16.38■□□□□ 0.21
CHD9-215ENST00000565442 SPDYE2BA6NHP3 402 aa16.35■□□□□ 0.21
CHD9-215ENST00000565442 SPDYE6P0CI01 402 aa16.35■□□□□ 0.21
CHD9-215ENST00000565442 SPDYE2Q495Y8 402 aa16.35■□□□□ 0.21
CHD9-215ENST00000565442 HAX1O00165 279 aa16.33■□□□□ 0.2
CHD9-215ENST00000565442 MKRN4PQ13434 485 aaPredicted RBP16.22■□□□□ 0.19
CHD9-215ENST00000565442 SPDYE1Q8NFV5 336 aaPredicted RBP16.14■□□□□ 0.17
CHD9-215ENST00000565442 CLEC11AQ9Y240 323 aa16.12■□□□□ 0.17
CHD9-215ENST00000565442 ZNF692Q9BU19 519 aaPredicted RBP16.11■□□□□ 0.17
CHD9-215ENST00000565442 SSUH2Q9Y2M2 353 aa16.11■□□□□ 0.17
CHD9-215ENST00000565442 EVX2Q03828 476 aa16.09■□□□□ 0.17
CHD9-215ENST00000565442 PRKAR2AP13861 404 aaKnown RBP16.08■□□□□ 0.16
CHD9-215ENST00000565442 C19orf67A6NJJ6 358 aa15.9■□□□□ 0.14
CHD9-215ENST00000565442 PABPN1Q86U42 306 aaKnown RBP eCLIP15.87■□□□□ 0.13
CHD9-215ENST00000565442 CHADLQ6NUI6 762 aa15.84■□□□□ 0.13
CHD9-215ENST00000565442 PRR29P0C7W0 189 aa15.81■□□□□ 0.12
CHD9-215ENST00000565442 GABBR2O75899 941 aa15.72■□□□□ 0.11
CHD9-215ENST00000565442 CSRNP3Q8WYN3 585 aa15.71■□□□□ 0.11
CHD9-215ENST00000565442 FARP1Q9Y4F1 1045 aaPredicted RBP15.58■□□□□ 0.08
CHD9-215ENST00000565442 CD44P16070 742 aaKnown RBP15.56■□□□□ 0.08
CHD9-215ENST00000565442 LHX8Q68G74 356 aa15.48■□□□□ 0.07
CHD9-215ENST00000565442 CLCN6P51797 869 aa15.39■□□□□ 0.05
CHD9-215ENST00000565442 EHMT2Q96KQ7 1210 aa15.39■□□□□ 0.05
CHD9-215ENST00000565442 STAG3Q9UJ98 1225 aa15.39■□□□□ 0.05
CHD9-215ENST00000565442 POTEIP0CG38 1075 aa15.38■□□□□ 0.05
CHD9-215ENST00000565442 CREBZFQ9NS37 354 aa15.36■□□□□ 0.05
CHD9-215ENST00000565442 SPDYE4A6NLX3 237 aa15.32■□□□□ 0.04
CHD9-215ENST00000565442 ZNF579Q8NAF0 562 aaKnown RBP15.31■□□□□ 0.04
CHD9-215ENST00000565442 ZRANB1Q9UGI0 708 aa15.3■□□□□ 0.04
CHD9-215ENST00000565442 DCBLD2Q96PD2 775 aa15.26■□□□□ 0.03
CHD9-215ENST00000565442 GALR2O43603 387 aaPredicted RBP15.13■□□□□ 0.01
CHD9-215ENST00000565442 PAK3O75914 559 aaPredicted RBP15.13■□□□□ 0.01
CHD9-215ENST00000565442 NPM1P06748 294 aaKnown RBP eCLIP15.08■□□□□ 0
CHD9-215ENST00000565442 MNX1P50219 401 aaPredicted RBP15.06■□□□□ 0
CHD9-215ENST00000565442 PHF12Q96QT6 1004 aa15.05■□□□□ -0
CHD9-215ENST00000565442 PROM2Q8N271 834 aa14.92□□□□□ -0.02
CHD9-215ENST00000565442 POTEB2H3BUK9 544 aa14.87□□□□□ -0.03
CHD9-215ENST00000565442 OTUD5Q96G74 571 aa14.87□□□□□ -0.03
CHD9-215ENST00000565442 PELP1Q8IZL8 1130 aaKnown RBP14.85□□□□□ -0.03
CHD9-215ENST00000565442 MS4A3Q96HJ5 214 aa14.85□□□□□ -0.03
CHD9-215ENST00000565442 ASTLQ6HA08 431 aaPredicted RBP14.81□□□□□ -0.04
CHD9-215ENST00000565442 TSPYL2Q9H2G4 693 aaPredicted RBP14.79□□□□□ -0.04
CHD9-215ENST00000565442 ATMINO43313 823 aaPredicted RBP14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms