RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 UBE2Q2LH0YL09 131 aa16.29■□□□□ 0.2
SHMT2-230ENST00000557427 RIMBP2O15034 1052 aa16.29■□□□□ 0.2
SHMT2-230ENST00000557427 LRP10Q7Z4F1 713 aa16.29■□□□□ 0.2
SHMT2-230ENST00000557427 SCAF8Q9UPN6 1271 aaKnown RBP16.29■□□□□ 0.2
SHMT2-230ENST00000557427 PAPPA2Q9BXP8 1791 aa16.28■□□□□ 0.2
SHMT2-230ENST00000557427 LRRC37AA6NMS7 1700 aa16.28■□□□□ 0.2
SHMT2-230ENST00000557427 HTATSF1O43719 755 aaKnown RBP16.28■□□□□ 0.2
SHMT2-230ENST00000557427 FKTNO75072 461 aa16.28■□□□□ 0.2
SHMT2-230ENST00000557427 FKBP1BP68106 108 aa16.28■□□□□ 0.2
SHMT2-230ENST00000557427 HNRNPUQ00839 825 aaKnown RBP eCLIP16.28■□□□□ 0.2
SHMT2-230ENST00000557427 DOK7Q18PE1 504 aa16.28■□□□□ 0.2
SHMT2-230ENST00000557427 ANGEL2Q5VTE6 544 aaKnown RBP16.28■□□□□ 0.2
SHMT2-230ENST00000557427 POLLQ9UGP5 575 aa16.28■□□□□ 0.2
SHMT2-230ENST00000557427 MAPK8IP3Q9UPT6 1336 aa16.27■□□□□ 0.2
SHMT2-230ENST00000557427 ECE2O60344 883 aa16.27■□□□□ 0.2
SHMT2-230ENST00000557427 VIL1P09327 827 aaKnown RBP16.27■□□□□ 0.2
SHMT2-230ENST00000557427 EIF4A1P60842 406 aaKnown RBP16.27■□□□□ 0.2
SHMT2-230ENST00000557427 SCARF1Q14162 830 aa16.27■□□□□ 0.2
SHMT2-230ENST00000557427 NFE2L2Q16236 605 aa16.27■□□□□ 0.2
SHMT2-230ENST00000557427 DDX46Q7L014 1031 aaKnown RBP16.27■□□□□ 0.2
SHMT2-230ENST00000557427 CFHR5Q9BXR6 569 aa16.27■□□□□ 0.2
SHMT2-230ENST00000557427 SCN9AQ15858 1988 aa16.27■□□□□ 0.19
SHMT2-230ENST00000557427 COL4A1P02462 1669 aa16.27■□□□□ 0.19
SHMT2-230ENST00000557427 EN2P19622 333 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-230ENST00000557427 MKRN3Q13064 507 aaKnown RBP16.26■□□□□ 0.19
SHMT2-230ENST00000557427 PRAMEF18Q5VWM3 479 aa16.26■□□□□ 0.19
SHMT2-230ENST00000557427 THUMPD2Q9BTF0 503 aaKnown RBP16.26■□□□□ 0.19
SHMT2-230ENST00000557427 NSFL1CQ9UNZ2 370 aaKnown RBP16.26■□□□□ 0.19
SHMT2-230ENST00000557427 KIAA0100Q14667 2235 aaKnown RBP16.25■□□□□ 0.19
SHMT2-230ENST00000557427 DLL1O00548 723 aa16.25■□□□□ 0.19
SHMT2-230ENST00000557427 ZNF280AP59817 542 aaPredicted RBP16.25■□□□□ 0.19
SHMT2-230ENST00000557427 GPSM2P81274 684 aa16.25■□□□□ 0.19
SHMT2-230ENST00000557427 PDIA6Q15084 440 aa16.25■□□□□ 0.19
SHMT2-230ENST00000557427 CCDC146Q8IYE0 955 aa16.25■□□□□ 0.19
SHMT2-230ENST00000557427 KDM3BQ7LBC6 1761 aa16.25■□□□□ 0.19
SHMT2-230ENST00000557427 RIPK4P57078 832 aa16.24■□□□□ 0.19
SHMT2-230ENST00000557427 INTS3Q68E01 1043 aaKnown RBP16.24■□□□□ 0.19
SHMT2-230ENST00000557427 NLRP10Q86W26 655 aa16.24■□□□□ 0.19
SHMT2-230ENST00000557427 FAM9BQ8IZU0 186 aa16.24■□□□□ 0.19
SHMT2-230ENST00000557427 CELF1Q92879 486 aaKnown RBP16.24■□□□□ 0.19
SHMT2-230ENST00000557427 RBBP6Q7Z6E9 1792 aaKnown RBP16.23■□□□□ 0.19
SHMT2-230ENST00000557427 C6orf229H3BNL8 230 aa16.23■□□□□ 0.19
SHMT2-230ENST00000557427 WDR43Q15061 677 aaKnown RBP eCLIP16.23■□□□□ 0.19
SHMT2-230ENST00000557427 NEUROD2Q15784 382 aa16.23■□□□□ 0.19
SHMT2-230ENST00000557427 OTOP1Q7RTM1 612 aa16.23■□□□□ 0.19
SHMT2-230ENST00000557427 TRIM17Q9Y577 477 aa16.23■□□□□ 0.19
SHMT2-230ENST00000557427 TRIOBPQ9H2D6 2365 aa16.23■□□□□ 0.19
SHMT2-230ENST00000557427 ZBED9Q6R2W3 1325 aa16.22■□□□□ 0.19
SHMT2-230ENST00000557427 PROSER3Q2NL68 480 aa16.22■□□□□ 0.19
SHMT2-230ENST00000557427 TMC4Q7Z404 712 aa16.22■□□□□ 0.19
SHMT2-230ENST00000557427 ZNF428Q96B54 188 aa16.22■□□□□ 0.19
SHMT2-230ENST00000557427 ANXA1P04083 346 aa16.21■□□□□ 0.19
SHMT2-230ENST00000557427 TBC1D16Q8TBP0 767 aa16.21■□□□□ 0.19
SHMT2-230ENST00000557427 PNISRQ8TF01 805 aaKnown RBP16.21■□□□□ 0.19
SHMT2-230ENST00000557427 OTUD5Q96G74 571 aa16.21■□□□□ 0.19
SHMT2-230ENST00000557427 ADAMTS8Q9UP79 889 aa16.21■□□□□ 0.19
SHMT2-230ENST00000557427 GMLQ99445 158 aa16.2■□□□□ 0.18
SHMT2-230ENST00000557427 TRMT112Q9UI30 125 aaKnown RBP16.2■□□□□ 0.18
SHMT2-230ENST00000557427 ERBB4Q15303 1308 aa16.19■□□□□ 0.18
SHMT2-230ENST00000557427 SH3TC1Q8TE82 1336 aa16.19■□□□□ 0.18
SHMT2-230ENST00000557427 PITPNM2Q9BZ72 1349 aa16.19■□□□□ 0.18
SHMT2-230ENST00000557427 DDX60Q8IY21 1712 aaKnown RBP16.19■□□□□ 0.18
SHMT2-230ENST00000557427 TMPOP42166 694 aaKnown RBP16.19■□□□□ 0.18
SHMT2-230ENST00000557427 CAP1Q01518 475 aa16.19■□□□□ 0.18
SHMT2-230ENST00000557427 PTPN12Q05209 780 aaKnown RBP16.19■□□□□ 0.18
SHMT2-230ENST00000557427 SREBF2Q12772 1141 aa16.19■□□□□ 0.18
SHMT2-230ENST00000557427 RSBN1LQ6PCB5 846 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-230ENST00000557427 ARMC5Q96C12 935 aa16.19■□□□□ 0.18
SHMT2-230ENST00000557427 MYOZ2Q9NPC6 264 aa16.19■□□□□ 0.18
SHMT2-230ENST00000557427 PTPN22Q9Y2R2 807 aa16.19■□□□□ 0.18
SHMT2-230ENST00000557427 ZNF609O15014 1411 aa16.19■□□□□ 0.18
SHMT2-230ENST00000557427 AGBL3Q8NEM8 1001 aa16.18■□□□□ 0.18
SHMT2-230ENST00000557427 EYA3Q99504 573 aa16.18■□□□□ 0.18
SHMT2-230ENST00000557427 CEP290O15078 2479 aa16.17■□□□□ 0.18
SHMT2-230ENST00000557427 H0YGN5 161 aa16.17■□□□□ 0.18
SHMT2-230ENST00000557427 TCIRG1Q13488 830 aa16.17■□□□□ 0.18
SHMT2-230ENST00000557427 TTLL12Q14166 644 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-230ENST00000557427 NBPF9Q3BBW0 867 aa16.17■□□□□ 0.18
SHMT2-230ENST00000557427 RUNDC1Q96C34 613 aa16.17■□□□□ 0.18
SHMT2-230ENST00000557427 A0A0C4DFX4 3053 aa16.17■□□□□ 0.18
SHMT2-230ENST00000557427 RANBP2P49792 3224 aaKnown RBP16.16■□□□□ 0.18
SHMT2-230ENST00000557427 USP17L8P0C7I0 530 aa16.16■□□□□ 0.18
SHMT2-230ENST00000557427 SF3B3Q15393 1217 aaKnown RBP16.16■□□□□ 0.18
SHMT2-230ENST00000557427 SPRYD7Q5W111 196 aa16.16■□□□□ 0.18
SHMT2-230ENST00000557427 COPS6Q7L5N1 327 aa16.16■□□□□ 0.18
SHMT2-230ENST00000557427 SLC17A8Q8NDX2 589 aa16.16■□□□□ 0.18
SHMT2-230ENST00000557427 ZC3H12CQ9C0D7 883 aaKnown RBP16.16■□□□□ 0.18
SHMT2-230ENST00000557427 EIF2S2P20042 333 aaKnown RBP16.15■□□□□ 0.18
SHMT2-230ENST00000557427 IFNL1Q8IU54 200 aa16.15■□□□□ 0.18
SHMT2-230ENST00000557427 TSPYL4Q9UJ04 414 aa16.15■□□□□ 0.18
SHMT2-230ENST00000557427 LAS1LQ9Y4W2 734 aaKnown RBP16.15■□□□□ 0.18
SHMT2-230ENST00000557427 COL6A3P12111 3177 aa16.15■□□□□ 0.18
SHMT2-230ENST00000557427 DLG5Q8TDM6 1919 aa16.14■□□□□ 0.17
SHMT2-230ENST00000557427 IGF2BP3O00425 579 aaKnown RBP eCLIP16.14■□□□□ 0.17
SHMT2-230ENST00000557427 ALDH1A1P00352 501 aa16.14■□□□□ 0.17
SHMT2-230ENST00000557427 AIMP1Q12904 312 aaKnown RBP16.14■□□□□ 0.17
SHMT2-230ENST00000557427 PRKG1Q13976 671 aa16.14■□□□□ 0.17
SHMT2-230ENST00000557427 HSP90AB3PQ58FF7 597 aa16.14■□□□□ 0.17
SHMT2-230ENST00000557427 LDLRAD1Q5T700 205 aa16.14■□□□□ 0.17
SHMT2-230ENST00000557427 CD99L2Q8TCZ2 262 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms