RNA–Protein interactions for RNA: ENST00000554270.5

PTPN21-205, Transcript of protein tyrosine phosphatase, non-receptor type 21, human

TSL 1 (best)

Gene PTPN21, Length 4,008 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN21-205	ENST00000554270	NRK	Q7Z2Y5	1582 aa		13.43	□□□□□ -0.26
PTPN21-205	ENST00000554270	ARID5B	Q14865	1188 aa		13.43	□□□□□ -0.26
PTPN21-205	ENST00000554270	BABAM1	Q9NWV8	329 aa		13.43	□□□□□ -0.26
PTPN21-205	ENST00000554270	AP5Z1	O43299	807 aa		13.43	□□□□□ -0.26
PTPN21-205	ENST00000554270	RXRA	P19793	462 aa		13.43	□□□□□ -0.26
PTPN21-205	ENST00000554270	SYNE3	Q6ZMZ3	975 aa		13.43	□□□□□ -0.26
PTPN21-205	ENST00000554270	SLC52A2	Q9HAB3	445 aa		13.43	□□□□□ -0.26
PTPN21-205	ENST00000554270		A0A0G2JLW4	131 aa		13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	HOXB7	P09629	217 aa		13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	PRIMPOL	Q96LW4	560 aa		13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	METTL22	Q9BUU2	404 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	DIP2B	Q9P265	1576 aa		13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	SSH2	Q76I76	1423 aa		13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	CFAP45	Q9UL16	551 aa		13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	PTPN21	Q16825	1174 aa		13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	GPHN	Q9NQX3	736 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	ITSN1	Q15811	1721 aa		13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	NRDC	O43847	1150 aa		13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	LRRC24	Q50LG9	513 aa		13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	RALYL	Q86SE5	291 aa	Known RBP	13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270	CEP126	Q9P2H0	1117 aa		13.42	□□□□□ -0.26
PTPN21-205	ENST00000554270		A0A1B0GVL5	298 aa		13.41	□□□□□ -0.26
PTPN21-205	ENST00000554270	TAF5L	O75529	589 aa		13.41	□□□□□ -0.26
PTPN21-205	ENST00000554270	CCDC57	Q2TAC2	916 aa		13.41	□□□□□ -0.26
PTPN21-205	ENST00000554270	MCMDC2	Q4G0Z9	681 aa		13.41	□□□□□ -0.26
PTPN21-205	ENST00000554270	TTC39A	Q5SRH9	613 aa		13.41	□□□□□ -0.26
PTPN21-205	ENST00000554270	DDX19A	Q9NUU7	478 aa	Known RBP	13.41	□□□□□ -0.26
PTPN21-205	ENST00000554270	MRVI1	Q9Y6F6	885 aa		13.41	□□□□□ -0.26
PTPN21-205	ENST00000554270	PEAK1	Q9H792	1746 aa		13.41	□□□□□ -0.26
PTPN21-205	ENST00000554270	CYP21A2	P08686	494 aa		13.41	□□□□□ -0.26
PTPN21-205	ENST00000554270	NPHP3	Q7Z494	1330 aa		13.41	□□□□□ -0.26
PTPN21-205	ENST00000554270	AOPEP	Q8N6M6	819 aa		13.41	□□□□□ -0.26
PTPN21-205	ENST00000554270	PUS3	Q9BZE2	481 aa	Known RBP	13.41	□□□□□ -0.26
PTPN21-205	ENST00000554270	RIMBP3C	A6NJZ7	1639 aa		13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	RIMBP3B	A6NNM3	1639 aa		13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	RIMBP3	Q9UFD9	1639 aa		13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	IDH1	O75874	414 aa	Known RBP	13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	NFXL1	Q6ZNB6	911 aa		13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	PDILT	Q8N807	584 aa		13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	FAM89A	Q96GI7	184 aa		13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	AGL	P35573	1532 aa		13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	MARCKS	P29966	332 aa	Predicted RBP	13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	ST3GAL1	Q11201	340 aa		13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	RRP12	Q5JTH9	1297 aa	Known RBP	13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	CCDC94	Q9BW85	323 aa	Predicted RBP	13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	GJB4	Q9NTQ9	266 aa		13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	PTPDC1	A2A3K4	754 aa		13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	TPM3	P06753	285 aa		13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	SKIL	P12757	684 aa		13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	HSPA2	P54652	639 aa		13.4	□□□□□ -0.26
PTPN21-205	ENST00000554270	ERICH4	A6NGS2	130 aa		13.39	□□□□□ -0.27
PTPN21-205	ENST00000554270	PHKG2	P15735	406 aa		13.39	□□□□□ -0.27
PTPN21-205	ENST00000554270	PTPN12	Q05209	780 aa	Known RBP	13.39	□□□□□ -0.27
PTPN21-205	ENST00000554270	TOB2	Q14106	344 aa	Predicted RBP	13.39	□□□□□ -0.27
PTPN21-205	ENST00000554270	KRT32	Q14532	448 aa		13.39	□□□□□ -0.27
PTPN21-205	ENST00000554270	PTPN14	Q15678	1187 aa		13.39	□□□□□ -0.27
PTPN21-205	ENST00000554270	PI16	Q6UXB8	463 aa		13.39	□□□□□ -0.27
PTPN21-205	ENST00000554270	PAG1	Q9NWQ8	432 aa		13.39	□□□□□ -0.27
PTPN21-205	ENST00000554270	HELB	Q8NG08	1087 aa	Predicted RBP	13.39	□□□□□ -0.27
PTPN21-205	ENST00000554270	KCNF1	Q9H3M0	494 aa		13.39	□□□□□ -0.27
PTPN21-205	ENST00000554270	NRXN3	Q9Y4C0	1643 aa		13.38	□□□□□ -0.27
PTPN21-205	ENST00000554270		U3KPZ7	1027 aa	Predicted RBP	13.38	□□□□□ -0.27
PTPN21-205	ENST00000554270	CEP57L1	Q8IYX8	460 aa		13.38	□□□□□ -0.27
PTPN21-205	ENST00000554270	KIAA1524	Q8TCG1	905 aa		13.38	□□□□□ -0.27
PTPN21-205	ENST00000554270	ERBB3	P21860	1342 aa		13.38	□□□□□ -0.27
PTPN21-205	ENST00000554270	CCDC158	Q5M9N0	1113 aa		13.38	□□□□□ -0.27
PTPN21-205	ENST00000554270	TMC6	Q7Z403	805 aa		13.38	□□□□□ -0.27
PTPN21-205	ENST00000554270	CNNM1	Q9NRU3	951 aa		13.38	□□□□□ -0.27
PTPN21-205	ENST00000554270	CWC25	Q9NXE8	425 aa	Predicted RBP	13.38	□□□□□ -0.27
PTPN21-205	ENST00000554270	DIP2A	Q14689	1571 aa		13.38	□□□□□ -0.27
PTPN21-205	ENST00000554270	CYP27B1	O15528	508 aa		13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	PDIA6	Q15084	440 aa		13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	ZNF396	Q96N95	335 aa	Predicted RBP	13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	TM6SF1	Q9BZW5	370 aa		13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270		A0A1B0GUL7	405 aa		13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	LMOD1	P29536	600 aa	Predicted RBP	13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	ZNF75D	P51815	510 aa		13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	TPM4	P67936	248 aa		13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	SCRN1	Q12765	414 aa		13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	TRDN	Q13061	729 aa		13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	CEP135	Q66GS9	1140 aa		13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	CEMIP	Q8WUJ3	1361 aa		13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	TERF1	P54274	439 aa		13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	CACTIN	Q8WUQ7	758 aa	Known RBP	13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	USP28	Q96RU2	1077 aa		13.37	□□□□□ -0.27
PTPN21-205	ENST00000554270	GOLGA8B	A8MQT2	603 aa		13.36	□□□□□ -0.27
PTPN21-205	ENST00000554270	MTX1	Q13505	466 aa		13.36	□□□□□ -0.27
PTPN21-205	ENST00000554270	SYNE4	Q8N205	404 aa		13.36	□□□□□ -0.27
PTPN21-205	ENST00000554270	C8orf76	Q96K31	380 aa		13.36	□□□□□ -0.27
PTPN21-205	ENST00000554270	TRERF1	Q96PN7	1200 aa		13.36	□□□□□ -0.27
PTPN21-205	ENST00000554270	C3	P01024	1663 aa		13.36	□□□□□ -0.27
PTPN21-205	ENST00000554270	PXDN	Q92626	1479 aa		13.36	□□□□□ -0.27
PTPN21-205	ENST00000554270	SERPINC1	P01008	464 aa		13.36	□□□□□ -0.27
PTPN21-205	ENST00000554270	ATP2B3	Q16720	1220 aa		13.36	□□□□□ -0.27
PTPN21-205	ENST00000554270	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.36	□□□□□ -0.27
PTPN21-205	ENST00000554270	PGBD1	Q96JS3	809 aa		13.36	□□□□□ -0.27
PTPN21-205	ENST00000554270	TCHH	Q07283	1943 aa		13.36	□□□□□ -0.27
PTPN21-205	ENST00000554270	CCDC69	A6NI79	296 aa		13.36	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms