RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 ZNF609O15014 1411 aa21.66■■□□□ 1.06
CLIP1-215ENST00000541108 A0A1B0GUL7 405 aa21.66■■□□□ 1.06
CLIP1-215ENST00000541108 TLR7Q9NYK1 1049 aaKnown RBP21.66■■□□□ 1.06
CLIP1-215ENST00000541108 ATP5JP18859 108 aa21.66■■□□□ 1.06
CLIP1-215ENST00000541108 TIMM10P62072 90 aa21.66■■□□□ 1.06
CLIP1-215ENST00000541108 DDX46Q7L014 1031 aaKnown RBP21.66■■□□□ 1.06
CLIP1-215ENST00000541108 NEUROD6Q96NK8 337 aa21.66■■□□□ 1.06
CLIP1-215ENST00000541108 NRXN2Q9P2S2 1712 aa21.65■■□□□ 1.06
CLIP1-215ENST00000541108 KLRG2A4D1S0 409 aaPredicted RBP21.65■■□□□ 1.06
CLIP1-215ENST00000541108 RPS8P62241 208 aaKnown RBP21.65■■□□□ 1.06
CLIP1-215ENST00000541108 CRY2Q49AN0 593 aa21.65■■□□□ 1.06
CLIP1-215ENST00000541108 CCDC24Q8N4L8 307 aa21.65■■□□□ 1.06
CLIP1-215ENST00000541108 DBNDD2Q9BQY9 259 aa21.65■■□□□ 1.06
CLIP1-215ENST00000541108 TRIM6-TRIM34B2RNG4 842 aa21.64■■□□□ 1.05
CLIP1-215ENST00000541108 CASC1Q6TDU7 716 aa21.64■■□□□ 1.05
CLIP1-215ENST00000541108 PARP3Q9Y6F1 533 aa21.64■■□□□ 1.05
CLIP1-215ENST00000541108 MMP10P09238 476 aa21.63■■□□□ 1.05
CLIP1-215ENST00000541108 TBC1D9Q6ZT07 1266 aa21.63■■□□□ 1.05
CLIP1-215ENST00000541108 CNTROBQ8N137 903 aa21.63■■□□□ 1.05
CLIP1-215ENST00000541108 ATP2B3Q16720 1220 aa21.63■■□□□ 1.05
CLIP1-215ENST00000541108 CELF1Q92879 486 aaKnown RBP21.63■■□□□ 1.05
CLIP1-215ENST00000541108 TNRC6CQ9HCJ0 1690 aaKnown RBP21.62■■□□□ 1.05
CLIP1-215ENST00000541108 PUM3Q15397 648 aaKnown RBP21.62■■□□□ 1.05
CLIP1-215ENST00000541108 SLC16A10Q8TF71 515 aa21.62■■□□□ 1.05
CLIP1-215ENST00000541108 RILPL2Q969X0 211 aa21.62■■□□□ 1.05
CLIP1-215ENST00000541108 BRIP1Q9BX63 1249 aa21.62■■□□□ 1.05
CLIP1-215ENST00000541108 FGFR2P21802 821 aa21.61■■□□□ 1.05
CLIP1-215ENST00000541108 CHRNDQ07001 517 aa21.61■■□□□ 1.05
CLIP1-215ENST00000541108 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.61■■□□□ 1.05
CLIP1-215ENST00000541108 LPIN2Q92539 896 aa21.61■■□□□ 1.05
CLIP1-215ENST00000541108 EVI5LQ96CN4 794 aa21.61■■□□□ 1.05
CLIP1-215ENST00000541108 XAGE2Q96GT9 111 aa21.61■■□□□ 1.05
CLIP1-215ENST00000541108 UPF2Q9HAU5 1272 aaKnown RBP21.61■■□□□ 1.05
CLIP1-215ENST00000541108 SEC24BO95487 1268 aa21.6■■□□□ 1.05
CLIP1-215ENST00000541108 CCDC158Q5M9N0 1113 aa21.6■■□□□ 1.05
CLIP1-215ENST00000541108 HOXA10P31260 410 aaPredicted RBP21.6■■□□□ 1.05
CLIP1-215ENST00000541108 GRAPQ13588 217 aa21.6■■□□□ 1.05
CLIP1-215ENST00000541108 GRAPLQ8TC17 118 aaPredicted RBP21.6■■□□□ 1.05
CLIP1-215ENST00000541108 RPGRQ92834 1020 aaKnown RBP21.6■■□□□ 1.05
CLIP1-215ENST00000541108 MINPP1Q9UNW1 487 aa21.6■■□□□ 1.05
CLIP1-215ENST00000541108 SPEF2Q9C093 1822 aa21.59■■□□□ 1.05
CLIP1-215ENST00000541108 GORABQ5T7V8 394 aa21.59■■□□□ 1.05
CLIP1-215ENST00000541108 ZNF512BQ96KM6 892 aaPredicted RBP21.59■■□□□ 1.05
CLIP1-215ENST00000541108 BOLA2Q9H3K6 86 aa21.59■■□□□ 1.05
CLIP1-215ENST00000541108 TAF1P21675 1872 aa21.58■■□□□ 1.05
CLIP1-215ENST00000541108 RBM17Q96I25 401 aaKnown RBP21.58■■□□□ 1.05
CLIP1-215ENST00000541108 HAUS7Q99871 368 aa21.58■■□□□ 1.05
CLIP1-215ENST00000541108 COL4A1P02462 1669 aa21.58■■□□□ 1.04
CLIP1-215ENST00000541108 AK9Q5TCS8 1911 aa21.57■■□□□ 1.04
CLIP1-215ENST00000541108 SLC5A1P13866 664 aa21.57■■□□□ 1.04
CLIP1-215ENST00000541108 PDE6BP35913 854 aa21.57■■□□□ 1.04
CLIP1-215ENST00000541108 MSL1Q68DK7 614 aa21.57■■□□□ 1.04
CLIP1-215ENST00000541108 TICAM2Q86XR7 235 aa21.57■■□□□ 1.04
CLIP1-215ENST00000541108 HELBQ8NG08 1087 aaPredicted RBP21.57■■□□□ 1.04
CLIP1-215ENST00000541108 CRAMP1Q96RY5 1269 aa21.57■■□□□ 1.04
CLIP1-215ENST00000541108 ANKRD2Q9GZV1 360 aa21.57■■□□□ 1.04
CLIP1-215ENST00000541108 TAF5LO75529 589 aa21.56■■□□□ 1.04
CLIP1-215ENST00000541108 IFIT1P09914 478 aaKnown RBP21.56■■□□□ 1.04
CLIP1-215ENST00000541108 UBE4AQ14139 1066 aa21.56■■□□□ 1.04
CLIP1-215ENST00000541108 BBOX1O75936 387 aa21.56■■□□□ 1.04
CLIP1-215ENST00000541108 CHMLP26374 656 aa21.56■■□□□ 1.04
CLIP1-215ENST00000541108 ADORA1P30542 326 aa21.56■■□□□ 1.04
CLIP1-215ENST00000541108 UPF1Q92900 1129 aaKnown RBP eCLIP21.56■■□□□ 1.04
CLIP1-215ENST00000541108 MAP4K4O95819 1239 aaPredicted RBP21.55■■□□□ 1.04
CLIP1-215ENST00000541108 ANKRD31Q8N7Z5 1873 aa21.54■■□□□ 1.04
CLIP1-215ENST00000541108 ARAP2Q8WZ64 1704 aa21.54■■□□□ 1.04
CLIP1-215ENST00000541108 TTC39AQ5SRH9 613 aa21.54■■□□□ 1.04
CLIP1-215ENST00000541108 HIP1O00291 1037 aa21.53■■□□□ 1.04
CLIP1-215ENST00000541108 TMC4Q7Z404 712 aa21.53■■□□□ 1.04
CLIP1-215ENST00000541108 SRGNP10124 158 aa21.53■■□□□ 1.04
CLIP1-215ENST00000541108 MFAP1P55081 439 aaKnown RBP21.53■■□□□ 1.04
CLIP1-215ENST00000541108 A0A1B0GUL6 1792 aa21.53■■□□□ 1.04
CLIP1-215ENST00000541108 UQCRFS1P1P0C7P4 283 aa21.52■■□□□ 1.04
CLIP1-215ENST00000541108 NPR1P16066 1061 aa21.52■■□□□ 1.04
CLIP1-215ENST00000541108 CCDC102BQ68D86 513 aa21.52■■□□□ 1.04
CLIP1-215ENST00000541108 REC8O95072 547 aa21.51■■□□□ 1.03
CLIP1-215ENST00000541108 ARID4AP29374 1257 aaPredicted RBP21.51■■□□□ 1.03
CLIP1-215ENST00000541108 ALDH1B1P30837 517 aa21.51■■□□□ 1.03
CLIP1-215ENST00000541108 PDGFDQ9GZP0 370 aaPredicted RBP21.51■■□□□ 1.03
CLIP1-215ENST00000541108 PAG1Q9NWQ8 432 aa21.51■■□□□ 1.03
CLIP1-215ENST00000541108 RFX7Q2KHR2 1363 aa21.51■■□□□ 1.03
CLIP1-215ENST00000541108 DNAJC2Q99543 621 aaKnown RBP21.5■■□□□ 1.03
CLIP1-215ENST00000541108 ESYT1Q9BSJ8 1104 aa21.5■■□□□ 1.03
CLIP1-215ENST00000541108 KBTBD3Q8NAB2 608 aa21.5■■□□□ 1.03
CLIP1-215ENST00000541108 RUFY2Q8WXA3 655 aa21.5■■□□□ 1.03
CLIP1-215ENST00000541108 MASTLQ96GX5 879 aa21.5■■□□□ 1.03
CLIP1-215ENST00000541108 TBC1D32Q96NH3 1257 aa21.5■■□□□ 1.03
CLIP1-215ENST00000541108 FSD1Q9BTV5 496 aa21.5■■□□□ 1.03
CLIP1-215ENST00000541108 SNAP23O00161 211 aa21.49■■□□□ 1.03
CLIP1-215ENST00000541108 EPB41L2O43491 1005 aaKnown RBP21.49■■□□□ 1.03
CLIP1-215ENST00000541108 C22orf23Q9BZE7 217 aa21.49■■□□□ 1.03
CLIP1-215ENST00000541108 DIAPH3Q9NSV4 1193 aa21.49■■□□□ 1.03
CLIP1-215ENST00000541108 LEMD3Q9Y2U8 911 aa21.49■■□□□ 1.03
CLIP1-215ENST00000541108 PHKA1P46020 1223 aa21.48■■□□□ 1.03
CLIP1-215ENST00000541108 XDHP47989 1333 aa21.48■■□□□ 1.03
CLIP1-215ENST00000541108 KCNJ4P48050 445 aa21.47■■□□□ 1.03
CLIP1-215ENST00000541108 CAVIN4Q5BKX8 364 aa21.47■■□□□ 1.03
CLIP1-215ENST00000541108 ZNF804BA4D1E1 1349 aa21.47■■□□□ 1.03
CLIP1-215ENST00000541108 H0YIN7 160 aa21.47■■□□□ 1.03
CLIP1-215ENST00000541108 GOLIM4O00461 696 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms