RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 NPHP3Q7Z494 1330 aa20.73■□□□□ 0.91
SFSWAP-203ENST00000535236 IL15P40933 162 aaPredicted RBP20.73■□□□□ 0.91
SFSWAP-203ENST00000535236 VEZTQ9HBM0 779 aa20.73■□□□□ 0.91
SFSWAP-203ENST00000535236 DDB1Q16531 1140 aa20.73■□□□□ 0.91
SFSWAP-203ENST00000535236 LMBR1LQ6UX01 489 aa20.73■□□□□ 0.91
SFSWAP-203ENST00000535236 C6orf50Q9HD87 102 aa20.73■□□□□ 0.91
SFSWAP-203ENST00000535236 MCMDC2Q4G0Z9 681 aa20.72■□□□□ 0.91
SFSWAP-203ENST00000535236 CTAGE1Q96RT6 745 aa20.72■□□□□ 0.91
SFSWAP-203ENST00000535236 POLR3GO15318 223 aaPredicted RBP20.72■□□□□ 0.91
SFSWAP-203ENST00000535236 ALDH1L1O75891 902 aa20.72■□□□□ 0.91
SFSWAP-203ENST00000535236 SLC39A6Q13433 755 aa20.72■□□□□ 0.91
SFSWAP-203ENST00000535236 SLC9C2Q5TAH2 1124 aa20.72■□□□□ 0.91
SFSWAP-203ENST00000535236 C8orf37Q96NL8 207 aa20.72■□□□□ 0.91
SFSWAP-203ENST00000535236 MAGEB6P1A0A0J9YX57 407 aa20.72■□□□□ 0.91
SFSWAP-203ENST00000535236 PLS1Q14651 629 aa20.72■□□□□ 0.91
SFSWAP-203ENST00000535236 NECAB1Q8N987 351 aa20.72■□□□□ 0.91
SFSWAP-203ENST00000535236 LRRC2Q9BYS8 371 aa20.72■□□□□ 0.91
SFSWAP-203ENST00000535236 IMPG2Q9BZV3 1241 aa20.72■□□□□ 0.91
SFSWAP-203ENST00000535236 CALM1P0DP23 149 aa20.71■□□□□ 0.91
SFSWAP-203ENST00000535236 CALM2P0DP24 149 aa20.71■□□□□ 0.91
SFSWAP-203ENST00000535236 CALM3P0DP25 149 aa20.71■□□□□ 0.91
SFSWAP-203ENST00000535236 KCNG4Q8TDN1 519 aa20.71■□□□□ 0.91
SFSWAP-203ENST00000535236 TCHPQ9BT92 498 aa20.71■□□□□ 0.91
SFSWAP-203ENST00000535236 GRM8O00222 908 aa20.71■□□□□ 0.91
SFSWAP-203ENST00000535236 GIMAP7Q8NHV1 300 aa20.71■□□□□ 0.91
SFSWAP-203ENST00000535236 NCBP1Q09161 790 aaKnown RBP20.71■□□□□ 0.91
SFSWAP-203ENST00000535236 AKAP4Q5JQC9 854 aa20.71■□□□□ 0.91
SFSWAP-203ENST00000535236 SPECC1LQ69YQ0 1117 aa20.71■□□□□ 0.91
SFSWAP-203ENST00000535236 CEP112Q8N8E3 955 aa20.71■□□□□ 0.91
SFSWAP-203ENST00000535236 MRVI1Q9Y6F6 885 aa20.71■□□□□ 0.91
SFSWAP-203ENST00000535236 ZSCAN22P10073 491 aaPredicted RBP20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 CYLC1P35663 651 aaPredicted RBP20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 GNG11P61952 73 aa20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 RGS22Q8NE09 1264 aa20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 SREK1Q8WXA9 508 aaKnown RBP20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 TTC12Q9H892 705 aaPredicted RBP20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 ASIC1P78348 528 aa20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 PARP3Q9Y6F1 533 aa20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 HMGXB3Q12766 1538 aa20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 POLD1P28340 1107 aa20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 MRPS9P82933 396 aaKnown RBP20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 ZC3H12CQ9C0D7 883 aaKnown RBP20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 C11orf95C9JLR9 678 aaPredicted RBP20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 KSR2Q6VAB6 950 aa20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 ARHGAP45Q92619 1136 aa20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 RBM8AQ9Y5S9 174 aaKnown RBP20.7■□□□□ 0.9
SFSWAP-203ENST00000535236 UBASH3AP57075 661 aa20.69■□□□□ 0.9
SFSWAP-203ENST00000535236 SPDYE3A6NKU9 549 aa20.69■□□□□ 0.9
SFSWAP-203ENST00000535236 TPTE2Q6XPS3 522 aa20.69■□□□□ 0.9
SFSWAP-203ENST00000535236 DZIP3Q86Y13 1208 aaKnown RBP20.69■□□□□ 0.9
SFSWAP-203ENST00000535236 TTC16Q8NEE8 873 aa20.69■□□□□ 0.9
SFSWAP-203ENST00000535236 SPAG1Q07617 926 aa20.69■□□□□ 0.9
SFSWAP-203ENST00000535236 FANCAO15360 1455 aa20.69■□□□□ 0.9
SFSWAP-203ENST00000535236 CKAP4Q07065 602 aaKnown RBP20.69■□□□□ 0.9
SFSWAP-203ENST00000535236 UVSSAQ2YD98 709 aa20.69■□□□□ 0.9
SFSWAP-203ENST00000535236 CCDC155Q8N6L0 562 aa20.69■□□□□ 0.9
SFSWAP-203ENST00000535236 MEIS3Q99687 375 aa20.69■□□□□ 0.9
SFSWAP-203ENST00000535236 PSMA7O14818 248 aa20.68■□□□□ 0.9
SFSWAP-203ENST00000535236 PLCG2P16885 1265 aa20.68■□□□□ 0.9
SFSWAP-203ENST00000535236 PCF11O94913 1555 aaKnown RBP20.68■□□□□ 0.9
SFSWAP-203ENST00000535236 JDP2Q8WYK2 163 aa20.68■□□□□ 0.9
SFSWAP-203ENST00000535236 RRP36Q96EU6 259 aaKnown RBP20.68■□□□□ 0.9
SFSWAP-203ENST00000535236 RBM26Q5T8P6 1007 aaKnown RBP20.68■□□□□ 0.9
SFSWAP-203ENST00000535236 SIRT1Q96EB6 747 aa20.68■□□□□ 0.9
SFSWAP-203ENST00000535236 Q6ZUG5 572 aa20.68■□□□□ 0.9
SFSWAP-203ENST00000535236 TMX3Q96JJ7 454 aa20.68■□□□□ 0.9
SFSWAP-203ENST00000535236 CBX1P83916 185 aa20.67■□□□□ 0.9
SFSWAP-203ENST00000535236 RTL9Q8NET4 1388 aa20.67■□□□□ 0.9
SFSWAP-203ENST00000535236 A0A1W2PRG0 241 aa20.67■□□□□ 0.9
SFSWAP-203ENST00000535236 GNAT2P19087 354 aa20.67■□□□□ 0.9
SFSWAP-203ENST00000535236 RBM27Q9P2N5 1060 aaKnown RBP20.67■□□□□ 0.9
SFSWAP-203ENST00000535236 SDSP20132 328 aa20.67■□□□□ 0.9
SFSWAP-203ENST00000535236 C6orf163Q5TEZ5 329 aa20.67■□□□□ 0.9
SFSWAP-203ENST00000535236 TFCP2L1Q9NZI6 479 aa20.67■□□□□ 0.9
SFSWAP-203ENST00000535236 RTCBQ9Y3I0 505 aaKnown RBP20.67■□□□□ 0.9
SFSWAP-203ENST00000535236 PRPHP41219 470 aa20.67■□□□□ 0.9
SFSWAP-203ENST00000535236 MRPS27Q92552 414 aaKnown RBP20.67■□□□□ 0.9
SFSWAP-203ENST00000535236 RRP9O43818 475 aaKnown RBP20.66■□□□□ 0.9
SFSWAP-203ENST00000535236 C16orf71Q8IYS4 520 aaPredicted RBP20.66■□□□□ 0.9
SFSWAP-203ENST00000535236 FAM107BQ9H098 131 aa20.66■□□□□ 0.9
SFSWAP-203ENST00000535236 PAG1Q9NWQ8 432 aa20.66■□□□□ 0.9
SFSWAP-203ENST00000535236 HSF2BPO75031 334 aa20.66■□□□□ 0.9
SFSWAP-203ENST00000535236 SELENOOQ9BVL4 669 aa20.66■□□□□ 0.9
SFSWAP-203ENST00000535236 IQCGQ9H095 443 aaKnown RBP20.66■□□□□ 0.9
SFSWAP-203ENST00000535236 ZSWIM4Q9H7M6 989 aa20.66■□□□□ 0.9
SFSWAP-203ENST00000535236 ARL1P40616 181 aaPredicted RBP20.66■□□□□ 0.9
SFSWAP-203ENST00000535236 NUCB1Q02818 461 aa20.66■□□□□ 0.9
SFSWAP-203ENST00000535236 IL2RBP14784 551 aa20.66■□□□□ 0.9
SFSWAP-203ENST00000535236 TCEANC2Q96MN5 208 aa20.66■□□□□ 0.9
SFSWAP-203ENST00000535236 KRT79Q5XKE5 535 aa20.65■□□□□ 0.9
SFSWAP-203ENST00000535236 OTUD6BQ8N6M0 293 aa20.65■□□□□ 0.9
SFSWAP-203ENST00000535236 RASAL2Q9UJF2 1139 aa20.65■□□□□ 0.9
SFSWAP-203ENST00000535236 FBLN1P23142 703 aa20.65■□□□□ 0.9
SFSWAP-203ENST00000535236 CEP135Q66GS9 1140 aa20.65■□□□□ 0.9
SFSWAP-203ENST00000535236 FAM13AO94988 1023 aa20.65■□□□□ 0.9
SFSWAP-203ENST00000535236 CALML3P27482 149 aa20.65■□□□□ 0.9
SFSWAP-203ENST00000535236 GIMAP6Q6P9H5 292 aa20.65■□□□□ 0.9
SFSWAP-203ENST00000535236 MCM9Q9NXL9 1143 aa20.65■□□□□ 0.9
SFSWAP-203ENST00000535236 PDE1AP54750 535 aa20.65■□□□□ 0.9
SFSWAP-203ENST00000535236 EYA3Q99504 573 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 265 ms