RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 LENG1Q96BZ8 264 aaPredicted RBP7.54□□□□□ -1.2
CD44-235ENST00000532339 NSUN5Q96P11 429 aaKnown RBP7.54□□□□□ -1.2
CD44-235ENST00000532339 SELPP16109 830 aa7.53□□□□□ -1.2
CD44-235ENST00000532339 GPR152Q8TDT2 470 aa7.53□□□□□ -1.2
CD44-235ENST00000532339 SEPT3Q9UH03 358 aa7.53□□□□□ -1.2
CD44-235ENST00000532339 J3QW42 95 aa7.52□□□□□ -1.21
CD44-235ENST00000532339 ZBTB39O15060 712 aa7.52□□□□□ -1.21
CD44-235ENST00000532339 ADGRE1Q14246 886 aa7.52□□□□□ -1.21
CD44-235ENST00000532339 MBTPS1Q14703 1052 aa7.52□□□□□ -1.21
CD44-235ENST00000532339 FBXO11Q86XK2 927 aa7.52□□□□□ -1.21
CD44-235ENST00000532339 OR13H1Q8NG92 308 aa7.52□□□□□ -1.21
CD44-235ENST00000532339 TPSG1Q9NRR2 321 aa7.52□□□□□ -1.21
CD44-235ENST00000532339 THOC2Q8NI27 1593 aaKnown RBP7.51□□□□□ -1.21
CD44-235ENST00000532339 TMEM88BA6NKF7 163 aa7.51□□□□□ -1.21
CD44-235ENST00000532339 TTC39BQ5VTQ0 682 aaPredicted RBP7.51□□□□□ -1.21
CD44-235ENST00000532339 SHISA2Q6UWI4 295 aa7.51□□□□□ -1.21
CD44-235ENST00000532339 TXNRD3Q86VQ6 643 aa7.51□□□□□ -1.21
CD44-235ENST00000532339 HELQQ8TDG4 1101 aa7.51□□□□□ -1.21
CD44-235ENST00000532339 SEMA6BQ9H3T3 888 aa7.51□□□□□ -1.21
CD44-235ENST00000532339 C1orf115Q9H7X2 142 aa7.51□□□□□ -1.21
CD44-235ENST00000532339 USP21Q9UK80 565 aa7.51□□□□□ -1.21
CD44-235ENST00000532339 TIMELESSQ9UNS1 1208 aa7.51□□□□□ -1.21
CD44-235ENST00000532339 RPLP1P05386 114 aaKnown RBP7.5□□□□□ -1.21
CD44-235ENST00000532339 HYAL2Q12891 473 aa7.5□□□□□ -1.21
CD44-235ENST00000532339 CACTIN-AS1Q8N1I8 211 aa7.5□□□□□ -1.21
CD44-235ENST00000532339 RIMBP3CA6NJZ7 1639 aa7.49□□□□□ -1.21
CD44-235ENST00000532339 RIMBP3BA6NNM3 1639 aa7.49□□□□□ -1.21
CD44-235ENST00000532339 RIMBP3Q9UFD9 1639 aa7.49□□□□□ -1.21
CD44-235ENST00000532339 SSFA2P28290 1259 aa7.49□□□□□ -1.21
CD44-235ENST00000532339 RSPO4Q2I0M5 234 aaPredicted RBP7.49□□□□□ -1.21
CD44-235ENST00000532339 NKAPLQ5M9Q1 402 aa7.49□□□□□ -1.21
CD44-235ENST00000532339 GDF6Q6KF10 455 aaPredicted RBP7.49□□□□□ -1.21
CD44-235ENST00000532339 NUDT16Q96DE0 195 aaKnown RBP7.49□□□□□ -1.21
CD44-235ENST00000532339 SPACA7Q96KW9 195 aa7.49□□□□□ -1.21
CD44-235ENST00000532339 PCSK2P16519 638 aa7.48□□□□□ -1.21
CD44-235ENST00000532339 SCNN1AP37088 669 aa7.48□□□□□ -1.21
CD44-235ENST00000532339 PDE12Q6L8Q7 609 aaKnown RBP7.48□□□□□ -1.21
CD44-235ENST00000532339 IL22RA1Q8N6P7 574 aa7.48□□□□□ -1.21
CD44-235ENST00000532339 DCAF11Q8TEB1 546 aa7.48□□□□□ -1.21
CD44-235ENST00000532339 SRA1Q9HD15 236 aaKnown RBP7.48□□□□□ -1.21
CD44-235ENST00000532339 ABI2Q9NYB9 513 aaPredicted RBP7.48□□□□□ -1.21
CD44-235ENST00000532339 BAZ1AQ9NRL2 1556 aaPredicted RBP7.47□□□□□ -1.21
CD44-235ENST00000532339 NOM1Q5C9Z4 860 aaKnown RBP7.47□□□□□ -1.21
CD44-235ENST00000532339 IGF2-ASQ6U949 168 aa7.47□□□□□ -1.21
CD44-235ENST00000532339 ATCAYQ86WG3 371 aa7.47□□□□□ -1.21
CD44-235ENST00000532339 GTF3C2Q8WUA4 911 aaPredicted RBP7.47□□□□□ -1.21
CD44-235ENST00000532339 MUC3BQ9H195 1237 aa7.47□□□□□ -1.21
CD44-235ENST00000532339 ELP3Q9H9T3 547 aa7.47□□□□□ -1.21
CD44-235ENST00000532339 MTMR7Q9Y216 660 aa7.47□□□□□ -1.21
CD44-235ENST00000532339 DEAF1O75398 565 aaPredicted RBP7.46□□□□□ -1.22
CD44-235ENST00000532339 COL13A1Q5TAT6 717 aaPredicted RBP7.46□□□□□ -1.22
CD44-235ENST00000532339 ZNF438Q7Z4V0 828 aa7.46□□□□□ -1.22
CD44-235ENST00000532339 MAP4K3Q8IVH8 894 aa7.46□□□□□ -1.22
CD44-235ENST00000532339 TTC16Q8NEE8 873 aa7.46□□□□□ -1.22
CD44-235ENST00000532339 EDEM1Q92611 657 aa7.46□□□□□ -1.22
CD44-235ENST00000532339 TRIM33Q9UPN9 1127 aa7.46□□□□□ -1.22
CD44-235ENST00000532339 DLL1O00548 723 aa7.45□□□□□ -1.22
CD44-235ENST00000532339 DYRK3O43781 588 aa7.45□□□□□ -1.22
CD44-235ENST00000532339 SMNDC1O75940 238 aaKnown RBP eCLIP7.45□□□□□ -1.22
CD44-235ENST00000532339 KIF4AO95239 1232 aa7.45□□□□□ -1.22
CD44-235ENST00000532339 ITGB7P26010 798 aa7.45□□□□□ -1.22
CD44-235ENST00000532339 DNM1Q05193 864 aaKnown RBP7.45□□□□□ -1.22
CD44-235ENST00000532339 ALKBH2Q6NS38 261 aa7.45□□□□□ -1.22
CD44-235ENST00000532339 TMEM63CQ9P1W3 806 aa7.45□□□□□ -1.22
CD44-235ENST00000532339 PDGFAP04085 211 aa7.44□□□□□ -1.22
CD44-235ENST00000532339 H2AFB1P0C5Y9 115 aa7.44□□□□□ -1.22
CD44-235ENST00000532339 H2AFB2P0C5Z0 115 aa7.44□□□□□ -1.22
CD44-235ENST00000532339 MPSTP25325 297 aa7.44□□□□□ -1.22
CD44-235ENST00000532339 MZF1P28698 734 aaPredicted RBP7.44□□□□□ -1.22
CD44-235ENST00000532339 EIF1AXP47813 144 aaKnown RBP7.44□□□□□ -1.22
CD44-235ENST00000532339 ATP11AP98196 1134 aa7.44□□□□□ -1.22
CD44-235ENST00000532339 CEP135Q66GS9 1140 aa7.44□□□□□ -1.22
CD44-235ENST00000532339 XKR5Q6UX68 686 aa7.44□□□□□ -1.22
CD44-235ENST00000532339 NCAPG2Q86XI2 1143 aa7.44□□□□□ -1.22
CD44-235ENST00000532339 WFDC12Q8WWY7 111 aa7.44□□□□□ -1.22
CD44-235ENST00000532339 PPME1Q9Y570 386 aa7.44□□□□□ -1.22
CD44-235ENST00000532339 CYP2E1P05181 493 aaPredicted RBP7.43□□□□□ -1.22
CD44-235ENST00000532339 ERICH6Q7L0X2 663 aa7.43□□□□□ -1.22
CD44-235ENST00000532339 TP53INP1Q96A56 240 aa7.43□□□□□ -1.22
CD44-235ENST00000532339 MRPL18Q9H0U6 180 aaKnown RBP7.43□□□□□ -1.22
CD44-235ENST00000532339 NESP48681 1621 aa7.42□□□□□ -1.22
CD44-235ENST00000532339 SCRIBQ14160 1630 aa7.42□□□□□ -1.22
CD44-235ENST00000532339 FAM13AO94988 1023 aa7.42□□□□□ -1.22
CD44-235ENST00000532339 NOS3P29474 1203 aa7.42□□□□□ -1.22
CD44-235ENST00000532339 IREB2P48200 963 aaKnown RBP7.42□□□□□ -1.22
CD44-235ENST00000532339 SETDB1Q15047 1291 aa7.42□□□□□ -1.22
CD44-235ENST00000532339 C8orf34Q49A92 452 aa7.42□□□□□ -1.22
CD44-235ENST00000532339 CYB5RLQ6IPT4 315 aa7.42□□□□□ -1.22
CD44-235ENST00000532339 CEP120Q8N960 986 aa7.42□□□□□ -1.22
CD44-235ENST00000532339 SSBP4Q9BWG4 385 aaPredicted RBP7.42□□□□□ -1.22
CD44-235ENST00000532339 PBX4Q9BYU1 374 aa7.42□□□□□ -1.22
CD44-235ENST00000532339 RASSF4Q9H2L5 321 aa7.42□□□□□ -1.22
CD44-235ENST00000532339 USTQ9Y2C2 406 aa7.42□□□□□ -1.22
CD44-235ENST00000532339 ARHGEF11O15085 1522 aa7.42□□□□□ -1.22
CD44-235ENST00000532339 FAM177BA6PVY3 158 aa7.41□□□□□ -1.22
CD44-235ENST00000532339 NPR3P17342 541 aa7.41□□□□□ -1.22
CD44-235ENST00000532339 CDC27P30260 824 aa7.41□□□□□ -1.22
CD44-235ENST00000532339 SF3B2Q13435 895 aaKnown RBP7.41□□□□□ -1.22
CD44-235ENST00000532339 MTMR3Q13615 1198 aa7.41□□□□□ -1.22
CD44-235ENST00000532339 AAMPQ13685 434 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms