RNA–Protein interactions for RNA: ENST00000522843.5

SDCBP-210, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-210ENST00000522843 USP35Q9P2H5 1018 aa10.01□□□□□ -0.81
SDCBP-210ENST00000522843 RGPD3A6NKT7 1758 aaPredicted RBP10.01□□□□□ -0.81
SDCBP-210ENST00000522843 RGPD4Q7Z3J3 1758 aa10.01□□□□□ -0.81
SDCBP-210ENST00000522843 PHRF1Q9P1Y6 1649 aaKnown RBP10□□□□□ -0.81
SDCBP-210ENST00000522843 A0A1W2PRU2 124 aa10□□□□□ -0.81
SDCBP-210ENST00000522843 ADAM23O75077 832 aa10□□□□□ -0.81
SDCBP-210ENST00000522843 GIGYF1O75420 1035 aaPredicted RBP10□□□□□ -0.81
SDCBP-210ENST00000522843 PDE3BQ13370 1112 aa10□□□□□ -0.81
SDCBP-210ENST00000522843 NEUROD2Q15784 382 aa10□□□□□ -0.81
SDCBP-210ENST00000522843 TPRNQ4KMQ1 711 aa10□□□□□ -0.81
SDCBP-210ENST00000522843 TRERF1Q96PN7 1200 aa10□□□□□ -0.81
SDCBP-210ENST00000522843 FHDC1Q9C0D6 1143 aaPredicted RBP10□□□□□ -0.81
SDCBP-210ENST00000522843 C14orf93Q9H972 538 aaKnown RBP10□□□□□ -0.81
SDCBP-210ENST00000522843 LRRC4BQ9NT99 713 aa10□□□□□ -0.81
SDCBP-210ENST00000522843 GOLGB1Q14789 3259 aaKnown RBP10□□□□□ -0.81
SDCBP-210ENST00000522843 ANKRD30BQ9BXX2 1392 aa10□□□□□ -0.81
SDCBP-210ENST00000522843 ITGB2P05107 769 aa9.99□□□□□ -0.81
SDCBP-210ENST00000522843 POU4F2Q12837 409 aa9.99□□□□□ -0.81
SDCBP-210ENST00000522843 LARP1Q6PKG0 1096 aaKnown RBP9.99□□□□□ -0.81
SDCBP-210ENST00000522843 GAS2L1Q99501 681 aaPredicted RBP9.99□□□□□ -0.81
SDCBP-210ENST00000522843 GPRASP1Q5JY77 1395 aa9.99□□□□□ -0.81
SDCBP-210ENST00000522843 SBF2Q86WG5 1849 aa9.98□□□□□ -0.81
SDCBP-210ENST00000522843 PLSCR1O15162 318 aa9.98□□□□□ -0.81
SDCBP-210ENST00000522843 ZC3H6P61129 1189 aaKnown RBP9.98□□□□□ -0.81
SDCBP-210ENST00000522843 SLC27A3Q5K4L6 730 aa9.98□□□□□ -0.81
SDCBP-210ENST00000522843 CFAP70Q5T0N1 1121 aa9.98□□□□□ -0.81
SDCBP-210ENST00000522843 LMO7Q8WWI1 1683 aa9.98□□□□□ -0.81
SDCBP-210ENST00000522843 PARP4Q9UKK3 1724 aaKnown RBP9.98□□□□□ -0.81
SDCBP-210ENST00000522843 NLRP3Q96P20 1036 aa9.97□□□□□ -0.81
SDCBP-210ENST00000522843 HIRIP3Q9BW71 556 aaPredicted RBP9.97□□□□□ -0.81
SDCBP-210ENST00000522843 NSFL1CQ9UNZ2 370 aaKnown RBP9.97□□□□□ -0.81
SDCBP-210ENST00000522843 DLC1Q96QB1 1528 aa9.97□□□□□ -0.81
SDCBP-210ENST00000522843 MX2P20592 715 aa9.96□□□□□ -0.82
SDCBP-210ENST00000522843 RFC5P40937 340 aa9.96□□□□□ -0.82
SDCBP-210ENST00000522843 BRPF1P55201 1214 aaPredicted RBP9.96□□□□□ -0.82
SDCBP-210ENST00000522843 CC2D2BQ6DHV5 1058 aa9.96□□□□□ -0.82
SDCBP-210ENST00000522843 TCP11L2Q8N4U5 519 aa9.96□□□□□ -0.82
SDCBP-210ENST00000522843 IL27Q8NEV9 243 aa9.96□□□□□ -0.82
SDCBP-210ENST00000522843 TRIM34Q9BYJ4 488 aa9.96□□□□□ -0.82
SDCBP-210ENST00000522843 GRIP2Q9C0E4 1043 aa9.96□□□□□ -0.82
SDCBP-210ENST00000522843 PCDHB9Q9Y5E1 797 aa9.96□□□□□ -0.82
SDCBP-210ENST00000522843 DHX57Q6P158 1386 aaKnown RBP9.96□□□□□ -0.82
SDCBP-210ENST00000522843 TULP4Q9NRJ4 1543 aa9.96□□□□□ -0.82
SDCBP-210ENST00000522843 ZBBXA8MT70 800 aa9.95□□□□□ -0.82
SDCBP-210ENST00000522843 ERVK-9P63128 1117 aa9.95□□□□□ -0.82
SDCBP-210ENST00000522843 WDR44Q5JSH3 913 aa9.95□□□□□ -0.82
SDCBP-210ENST00000522843 NUTM2GQ5VZR2 741 aa9.95□□□□□ -0.82
SDCBP-210ENST00000522843 NBPF10Q6P3W6 841 aaKnown RBP9.95□□□□□ -0.82
SDCBP-210ENST00000522843 NBPF15Q8N660 670 aa9.95□□□□□ -0.82
SDCBP-210ENST00000522843 SHANK3Q9BYB0 1731 aa9.95□□□□□ -0.82
SDCBP-210ENST00000522843 LRRC37A3O60309 1634 aa9.94□□□□□ -0.82
SDCBP-210ENST00000522843 ADGRB1O14514 1584 aa9.94□□□□□ -0.82
SDCBP-210ENST00000522843 OVOS2A0A0G2JMS6 1433 aa9.94□□□□□ -0.82
SDCBP-210ENST00000522843 OVOS2A0A0J9YW53 1432 aa9.94□□□□□ -0.82
SDCBP-210ENST00000522843 OVOS2Q6IE36 1432 aa9.94□□□□□ -0.82
SDCBP-210ENST00000522843 OIP5O43482 229 aa9.94□□□□□ -0.82
SDCBP-210ENST00000522843 PROCP04070 461 aa9.94□□□□□ -0.82
SDCBP-210ENST00000522843 XP32Q5T750 250 aa9.94□□□□□ -0.82
SDCBP-210ENST00000522843 RNF20Q5VTR2 975 aa9.94□□□□□ -0.82
SDCBP-210ENST00000522843 ATP7BP35670 1465 aa9.93□□□□□ -0.82
SDCBP-210ENST00000522843 SPATA31C2B4DYI2 1134 aa9.93□□□□□ -0.82
SDCBP-210ENST00000522843 EVA1CP58658 441 aa9.93□□□□□ -0.82
SDCBP-210ENST00000522843 CLN3Q13286 438 aa9.93□□□□□ -0.82
SDCBP-210ENST00000522843 PPARGC1BQ86YN6 1023 aaKnown RBP9.93□□□□□ -0.82
SDCBP-210ENST00000522843 GALNT6Q8NCL4 622 aa9.93□□□□□ -0.82
SDCBP-210ENST00000522843 NGDNQ8NEJ9 315 aaKnown RBP9.93□□□□□ -0.82
SDCBP-210ENST00000522843 MAP3K5Q99683 1374 aa9.92□□□□□ -0.82
SDCBP-210ENST00000522843 WASLO00401 505 aaPredicted RBP9.92□□□□□ -0.82
SDCBP-210ENST00000522843 F11P03951 625 aa9.92□□□□□ -0.82
SDCBP-210ENST00000522843 SLC15A2Q16348 729 aa9.92□□□□□ -0.82
SDCBP-210ENST00000522843 CYP2U1Q7Z449 544 aa9.92□□□□□ -0.82
SDCBP-210ENST00000522843 MTFR1LQ9H019 292 aa9.92□□□□□ -0.82
SDCBP-210ENST00000522843 NUCKS1Q9H1E3 243 aaKnown RBP9.92□□□□□ -0.82
SDCBP-210ENST00000522843 TIMMDC1Q9NPL8 285 aa9.92□□□□□ -0.82
SDCBP-210ENST00000522843 POGKQ9P215 609 aa9.92□□□□□ -0.82
SDCBP-210ENST00000522843 THRAP3Q9Y2W1 955 aaKnown RBP9.92□□□□□ -0.82
SDCBP-210ENST00000522843 COL5A2P05997 1499 aaPredicted RBP9.91□□□□□ -0.82
SDCBP-210ENST00000522843 CPDO75976 1380 aa9.91□□□□□ -0.82
SDCBP-210ENST00000522843 FBXO45P0C2W1 286 aa9.91□□□□□ -0.82
SDCBP-210ENST00000522843 TXNRD1Q16881 649 aa9.91□□□□□ -0.82
SDCBP-210ENST00000522843 ARXQ96QS3 562 aa9.91□□□□□ -0.82
SDCBP-210ENST00000522843 USP19O94966 1318 aa9.9□□□□□ -0.82
SDCBP-210ENST00000522843 MAP2K3P46734 347 aa9.9□□□□□ -0.82
SDCBP-210ENST00000522843 TMEM259Q4ZIN3 620 aa9.9□□□□□ -0.82
SDCBP-210ENST00000522843 TAS1R3Q7RTX0 852 aa9.9□□□□□ -0.82
SDCBP-210ENST00000522843 MARCH10Q8NA82 808 aaPredicted RBP9.9□□□□□ -0.82
SDCBP-210ENST00000522843 CFHR5Q9BXR6 569 aa9.9□□□□□ -0.82
SDCBP-210ENST00000522843 OXCT2Q9BYC2 517 aaPredicted RBP9.9□□□□□ -0.82
SDCBP-210ENST00000522843 TRAK1Q9UPV9 953 aa9.9□□□□□ -0.82
SDCBP-210ENST00000522843 BCL9O00512 1426 aa9.9□□□□□ -0.83
SDCBP-210ENST00000522843 PAPPAQ13219 1627 aa9.89□□□□□ -0.83
SDCBP-210ENST00000522843 MCCD1P59942 119 aaPredicted RBP9.89□□□□□ -0.83
SDCBP-210ENST00000522843 STK32BQ9NY57 414 aa9.89□□□□□ -0.83
SDCBP-210ENST00000522843 CRB1P82279 1406 aa9.89□□□□□ -0.83
SDCBP-210ENST00000522843 EIF3AQ14152 1382 aaKnown RBP9.88□□□□□ -0.83
SDCBP-210ENST00000522843 SNRPNP63162 240 aaKnown RBP9.88□□□□□ -0.83
SDCBP-210ENST00000522843 NUDT16Q96DE0 195 aaKnown RBP9.88□□□□□ -0.83
SDCBP-210ENST00000522843 GOPCQ9HD26 462 aa9.88□□□□□ -0.83
SDCBP-210ENST00000522843 WNK3Q9BYP7 1800 aa9.88□□□□□ -0.83
SDCBP-210ENST00000522843 POLR3AO14802 1390 aaPredicted RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms