RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 GAS6Q14393 721 aa5.34□□□□□ -1.55
CPNE3-204ENST00000517862 GIGYF2Q6Y7W6 1299 aaKnown RBP5.34□□□□□ -1.55
CPNE3-204ENST00000517862 TCP11L2Q8N4U5 519 aa5.34□□□□□ -1.55
CPNE3-204ENST00000517862 CAPNS2Q96L46 248 aa5.34□□□□□ -1.55
CPNE3-204ENST00000517862 TSEN34Q9BSV6 310 aaKnown RBP5.34□□□□□ -1.55
CPNE3-204ENST00000517862 ABT1Q9ULW3 272 aaKnown RBP5.34□□□□□ -1.55
CPNE3-204ENST00000517862 SPATA31E1Q6ZUB1 1445 aa5.33□□□□□ -1.56
CPNE3-204ENST00000517862 MUC6Q6W4X9 2439 aa5.33□□□□□ -1.56
CPNE3-204ENST00000517862 SBF1O95248 1867 aa5.33□□□□□ -1.56
CPNE3-204ENST00000517862 GLTPD2A6NH11 291 aa5.33□□□□□ -1.56
CPNE3-204ENST00000517862 KRT37O76014 449 aa5.33□□□□□ -1.56
CPNE3-204ENST00000517862 EVA1CP58658 441 aa5.33□□□□□ -1.56
CPNE3-204ENST00000517862 HIC1Q14526 733 aa5.33□□□□□ -1.56
CPNE3-204ENST00000517862 PRDM11Q9NQV5 511 aa5.33□□□□□ -1.56
CPNE3-204ENST00000517862 HCN4Q9Y3Q4 1203 aa5.33□□□□□ -1.56
CPNE3-204ENST00000517862 ARHGEF10O15013 1369 aa5.32□□□□□ -1.56
CPNE3-204ENST00000517862 H0YGN5 161 aa5.32□□□□□ -1.56
CPNE3-204ENST00000517862 CHRNA4P43681 627 aa5.32□□□□□ -1.56
CPNE3-204ENST00000517862 PSME1Q06323 249 aa5.32□□□□□ -1.56
CPNE3-204ENST00000517862 CCDC82Q8N4S0 544 aa5.32□□□□□ -1.56
CPNE3-204ENST00000517862 DEFB123Q8N688 67 aa5.32□□□□□ -1.56
CPNE3-204ENST00000517862 SYMPKQ92797 1274 aaKnown RBP5.32□□□□□ -1.56
CPNE3-204ENST00000517862 CFDP1Q9UEE9 299 aaPredicted RBP5.32□□□□□ -1.56
CPNE3-204ENST00000517862 BRCA2P51587 3418 aa5.32□□□□□ -1.56
CPNE3-204ENST00000517862 SETXQ7Z333 2677 aaKnown RBP5.32□□□□□ -1.56
CPNE3-204ENST00000517862 ARHGEF5Q12774 1597 aa5.32□□□□□ -1.56
CPNE3-204ENST00000517862 EIF2AK4Q9P2K8 1649 aaKnown RBP5.31□□□□□ -1.56
CPNE3-204ENST00000517862 PRR36Q9H6K5 1346 aa5.31□□□□□ -1.56
CPNE3-204ENST00000517862 PIK3R2O00459 728 aa5.31□□□□□ -1.56
CPNE3-204ENST00000517862 SPTLC1O15269 473 aa5.31□□□□□ -1.56
CPNE3-204ENST00000517862 AOC2O75106 756 aa5.31□□□□□ -1.56
CPNE3-204ENST00000517862 FLIIQ13045 1269 aa5.31□□□□□ -1.56
CPNE3-204ENST00000517862 CYP4F22Q6NT55 531 aa5.31□□□□□ -1.56
CPNE3-204ENST00000517862 ACDQ96AP0 544 aa5.31□□□□□ -1.56
CPNE3-204ENST00000517862 HIRIP3Q9BW71 556 aaPredicted RBP5.31□□□□□ -1.56
CPNE3-204ENST00000517862 N4BP2Q86UW6 1770 aaPredicted RBP5.31□□□□□ -1.56
CPNE3-204ENST00000517862 USP6P35125 1406 aa5.31□□□□□ -1.56
CPNE3-204ENST00000517862 PIK3C2AO00443 1686 aa5.31□□□□□ -1.56
CPNE3-204ENST00000517862 GCC2Q8IWJ2 1684 aa5.31□□□□□ -1.56
CPNE3-204ENST00000517862 AKAP12Q02952 1782 aa5.3□□□□□ -1.56
CPNE3-204ENST00000517862 SOX1O00570 391 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-204ENST00000517862 MAP2K2P36507 400 aa5.3□□□□□ -1.56
CPNE3-204ENST00000517862 GCGRP47871 477 aa5.3□□□□□ -1.56
CPNE3-204ENST00000517862 MRE11P49959 708 aa5.3□□□□□ -1.56
CPNE3-204ENST00000517862 COL9A2Q14055 689 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-204ENST00000517862 DDB1Q16531 1140 aa5.3□□□□□ -1.56
CPNE3-204ENST00000517862 MAP3K11Q16584 847 aa5.3□□□□□ -1.56
CPNE3-204ENST00000517862 RSPO4Q2I0M5 234 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-204ENST00000517862 CTU1Q7Z7A3 348 aaKnown RBP5.3□□□□□ -1.56
CPNE3-204ENST00000517862 COL23A1Q86Y22 540 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-204ENST00000517862 PCMTD1Q96MG8 357 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-204ENST00000517862 SLC52A1Q9NWF4 448 aa5.3□□□□□ -1.56
CPNE3-204ENST00000517862 BDP1A6H8Y1 2624 aa5.29□□□□□ -1.56
CPNE3-204ENST00000517862 EYSQ5T1H1 3165 aa5.29□□□□□ -1.56
CPNE3-204ENST00000517862 ZC3H4Q9UPT8 1303 aaKnown RBP5.29□□□□□ -1.56
CPNE3-204ENST00000517862 KAT6BQ8WYB5 2073 aa5.29□□□□□ -1.56
CPNE3-204ENST00000517862 MBD5Q9P267 1494 aa5.29□□□□□ -1.56
CPNE3-204ENST00000517862 GATA4P43694 442 aa5.29□□□□□ -1.56
CPNE3-204ENST00000517862 MCM6Q14566 821 aa5.29□□□□□ -1.56
CPNE3-204ENST00000517862 CHRNA2Q15822 529 aa5.29□□□□□ -1.56
CPNE3-204ENST00000517862 NLRP7Q8WX94 980 aa5.29□□□□□ -1.56
CPNE3-204ENST00000517862 THRAP3Q9Y2W1 955 aaKnown RBP5.29□□□□□ -1.56
CPNE3-204ENST00000517862 METP08581 1390 aa5.29□□□□□ -1.56
CPNE3-204ENST00000517862 KNDC1Q76NI1 1749 aa5.28□□□□□ -1.56
CPNE3-204ENST00000517862 ZDBF2Q9HCK1 2354 aa5.28□□□□□ -1.56
CPNE3-204ENST00000517862 DDX11L8A8MPP1 907 aa5.28□□□□□ -1.56
CPNE3-204ENST00000517862 OIP5O43482 229 aa5.28□□□□□ -1.56
CPNE3-204ENST00000517862 HYAL3O43820 417 aaPredicted RBP5.28□□□□□ -1.56
CPNE3-204ENST00000517862 TRAK2O60296 914 aa5.28□□□□□ -1.56
CPNE3-204ENST00000517862 OATP04181 439 aa5.28□□□□□ -1.56
CPNE3-204ENST00000517862 MDM2Q00987 491 aaPredicted RBP5.28□□□□□ -1.56
CPNE3-204ENST00000517862 PTCRAQ6ISU1 281 aaPredicted RBP5.28□□□□□ -1.56
CPNE3-204ENST00000517862 LARP1Q6PKG0 1096 aaKnown RBP5.28□□□□□ -1.56
CPNE3-204ENST00000517862 Q7L0L9 218 aa5.28□□□□□ -1.56
CPNE3-204ENST00000517862 MARCH10Q8NA82 808 aaPredicted RBP5.28□□□□□ -1.56
CPNE3-204ENST00000517862 PHOX2BQ99453 314 aa5.28□□□□□ -1.56
CPNE3-204ENST00000517862 NUDT12Q9BQG2 462 aa5.28□□□□□ -1.56
CPNE3-204ENST00000517862 LAMA3Q16787 3333 aa5.28□□□□□ -1.56
CPNE3-204ENST00000517862 KIF1AQ12756 1690 aa5.28□□□□□ -1.56
CPNE3-204ENST00000517862 ARFGEF1Q9Y6D6 1849 aa5.27□□□□□ -1.57
CPNE3-204ENST00000517862 NRXN1Q9ULB1 1477 aa5.27□□□□□ -1.57
CPNE3-204ENST00000517862 A0A0G2JLW4 131 aa5.27□□□□□ -1.57
CPNE3-204ENST00000517862 BCL9O00512 1426 aa5.27□□□□□ -1.57
CPNE3-204ENST00000517862 JUNDP17535 347 aa5.27□□□□□ -1.57
CPNE3-204ENST00000517862 CENPFP49454 3210 aa5.27□□□□□ -1.57
CPNE3-204ENST00000517862 NR5A1Q13285 461 aa5.27□□□□□ -1.57
CPNE3-204ENST00000517862 FOXR1Q6PIV2 292 aa5.27□□□□□ -1.57
CPNE3-204ENST00000517862 PXYLP1Q8TE99 480 aa5.27□□□□□ -1.57
CPNE3-204ENST00000517862 POM121Q96HA1 1249 aa5.27□□□□□ -1.57
CPNE3-204ENST00000517862 ERBINQ96RT1 1412 aa5.27□□□□□ -1.57
CPNE3-204ENST00000517862 GOPCQ9HD26 462 aa5.27□□□□□ -1.57
CPNE3-204ENST00000517862 ANKRD11Q6UB99 2663 aaPredicted RBP5.27□□□□□ -1.57
CPNE3-204ENST00000517862 KIAA0100Q14667 2235 aaKnown RBP5.27□□□□□ -1.57
CPNE3-204ENST00000517862 COL18A1P39060 1754 aa5.27□□□□□ -1.57
CPNE3-204ENST00000517862 ZNF644Q9H582 1327 aaPredicted RBP5.26□□□□□ -1.57
CPNE3-204ENST00000517862 DYRK3O43781 588 aa5.26□□□□□ -1.57
CPNE3-204ENST00000517862 ARID5BQ14865 1188 aa5.26□□□□□ -1.57
CPNE3-204ENST00000517862 LINC01559Q495D7 138 aa5.26□□□□□ -1.57
CPNE3-204ENST00000517862 LDHDQ86WU2 507 aa5.26□□□□□ -1.57
CPNE3-204ENST00000517862 FAM174AQ8TBP5 190 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms