RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 KRT25Q7Z3Z0 450 aa8.66□□□□□ -1.02
NUP54-218ENST00000515460 ZMYND15Q9H091 742 aa8.66□□□□□ -1.02
NUP54-218ENST00000515460 TPSG1Q9NRR2 321 aa8.66□□□□□ -1.02
NUP54-218ENST00000515460 DMGDHQ9UI17 866 aaKnown RBP8.66□□□□□ -1.02
NUP54-218ENST00000515460 GTF3C3Q9Y5Q9 886 aa8.66□□□□□ -1.02
NUP54-218ENST00000515460 CD109Q6YHK3 1445 aa8.65□□□□□ -1.02
NUP54-218ENST00000515460 DGKZQ13574 1117 aa8.65□□□□□ -1.02
NUP54-218ENST00000515460 PSAPL1Q6NUJ1 521 aa8.65□□□□□ -1.02
NUP54-218ENST00000515460 VTI1AQ96AJ9 217 aa8.65□□□□□ -1.02
NUP54-218ENST00000515460 NACC1Q96RE7 527 aa8.65□□□□□ -1.02
NUP54-218ENST00000515460 PTPRGP23470 1445 aa8.64□□□□□ -1.03
NUP54-218ENST00000515460 IDH3AP50213 366 aa8.64□□□□□ -1.03
NUP54-218ENST00000515460 CFAP70Q5T0N1 1121 aa8.64□□□□□ -1.03
NUP54-218ENST00000515460 ARXQ96QS3 562 aa8.64□□□□□ -1.03
NUP54-218ENST00000515460 EFCC1Q9HA90 598 aa8.64□□□□□ -1.03
NUP54-218ENST00000515460 A0A0A0MRY4 1105 aa8.63□□□□□ -1.03
NUP54-218ENST00000515460 RGS9O75916 674 aaPredicted RBP8.63□□□□□ -1.03
NUP54-218ENST00000515460 EPB42P16452 691 aa8.63□□□□□ -1.03
NUP54-218ENST00000515460 GRNP28799 593 aaKnown RBP8.63□□□□□ -1.03
NUP54-218ENST00000515460 INPP5BP32019 993 aa8.63□□□□□ -1.03
NUP54-218ENST00000515460 RSPO4Q2I0M5 234 aaPredicted RBP8.63□□□□□ -1.03
NUP54-218ENST00000515460 FAM35AQ86V20 835 aa8.63□□□□□ -1.03
NUP54-218ENST00000515460 DMRTC2Q8IXT2 367 aaPredicted RBP8.63□□□□□ -1.03
NUP54-218ENST00000515460 NAGPAQ9UK23 515 aa8.63□□□□□ -1.03
NUP54-218ENST00000515460 CPB1P15086 417 aa8.62□□□□□ -1.03
NUP54-218ENST00000515460 RFX1P22670 979 aa8.62□□□□□ -1.03
NUP54-218ENST00000515460 WEE1P30291 646 aa8.62□□□□□ -1.03
NUP54-218ENST00000515460 AFF1P51825 1210 aaKnown RBP8.62□□□□□ -1.03
NUP54-218ENST00000515460 FAM200AQ8TCP9 573 aa8.62□□□□□ -1.03
NUP54-218ENST00000515460 QTRT2Q9H974 415 aaKnown RBP8.62□□□□□ -1.03
NUP54-218ENST00000515460 ERICH3Q5RHP9 1530 aa8.62□□□□□ -1.03
NUP54-218ENST00000515460 MAGI3Q5TCQ9 1506 aa8.62□□□□□ -1.03
NUP54-218ENST00000515460 SASH3O75995 380 aa8.61□□□□□ -1.03
NUP54-218ENST00000515460 MICAL2O94851 1124 aa8.61□□□□□ -1.03
NUP54-218ENST00000515460 SELPP16109 830 aa8.61□□□□□ -1.03
NUP54-218ENST00000515460 TARSP26639 723 aaKnown RBP8.61□□□□□ -1.03
NUP54-218ENST00000515460 RAC1P63000 192 aa8.61□□□□□ -1.03
NUP54-218ENST00000515460 MLLT1Q03111 559 aaPredicted RBP8.61□□□□□ -1.03
NUP54-218ENST00000515460 ZMYM1Q5SVZ6 1142 aa8.61□□□□□ -1.03
NUP54-218ENST00000515460 SHISA2Q6UWI4 295 aa8.61□□□□□ -1.03
NUP54-218ENST00000515460 ZFATQ9P243 1243 aa8.61□□□□□ -1.03
NUP54-218ENST00000515460 USP20Q9Y2K6 914 aa8.61□□□□□ -1.03
NUP54-218ENST00000515460 UHRF1BP1Q6BDS2 1440 aa8.61□□□□□ -1.03
NUP54-218ENST00000515460 C9orf172C9J069 976 aa8.6□□□□□ -1.03
NUP54-218ENST00000515460 ELNP15502 786 aa8.6□□□□□ -1.03
NUP54-218ENST00000515460 ARSDP51689 593 aa8.6□□□□□ -1.03
NUP54-218ENST00000515460 NKAPLQ5M9Q1 402 aa8.6□□□□□ -1.03
NUP54-218ENST00000515460 BIVM-ERCC5R4GMW8 1640 aa8.6□□□□□ -1.03
NUP54-218ENST00000515460 RUSC2Q8N2Y8 1516 aa8.59□□□□□ -1.03
NUP54-218ENST00000515460 ARAP3Q8WWN8 1544 aa8.59□□□□□ -1.03
NUP54-218ENST00000515460 FOXO3O43524 673 aa8.59□□□□□ -1.03
NUP54-218ENST00000515460 C11orf91Q3C1V1 193 aa8.59□□□□□ -1.03
NUP54-218ENST00000515460 IFT43Q96FT9 208 aa8.59□□□□□ -1.03
NUP54-218ENST00000515460 SIGLEC1Q9BZZ2 1709 aa8.58□□□□□ -1.04
NUP54-218ENST00000515460 ZBTB42B2RXF5 422 aa8.58□□□□□ -1.04
NUP54-218ENST00000515460 RARAP10276 462 aa8.58□□□□□ -1.04
NUP54-218ENST00000515460 YY1P25490 414 aa8.58□□□□□ -1.04
NUP54-218ENST00000515460 PCSK7Q16549 785 aa8.58□□□□□ -1.04
NUP54-218ENST00000515460 HFE2Q6ZVN8 426 aa8.58□□□□□ -1.04
NUP54-218ENST00000515460 DHX32Q7L7V1 743 aaKnown RBP8.58□□□□□ -1.04
NUP54-218ENST00000515460 CCDC97Q96F63 343 aaPredicted RBP8.58□□□□□ -1.04
NUP54-218ENST00000515460 PRIMPOLQ96LW4 560 aa8.58□□□□□ -1.04
NUP54-218ENST00000515460 USP21Q9UK80 565 aa8.58□□□□□ -1.04
NUP54-218ENST00000515460 ALKQ9UM73 1620 aa8.58□□□□□ -1.04
NUP54-218ENST00000515460 TTC37Q6PGP7 1564 aa8.57□□□□□ -1.04
NUP54-218ENST00000515460 NCOA1Q15788 1441 aa8.57□□□□□ -1.04
NUP54-218ENST00000515460 DYRK3O43781 588 aa8.57□□□□□ -1.04
NUP54-218ENST00000515460 MAP3K6O95382 1288 aa8.57□□□□□ -1.04
NUP54-218ENST00000515460 ADGRE1Q14246 886 aa8.57□□□□□ -1.04
NUP54-218ENST00000515460 MBTPS1Q14703 1052 aa8.57□□□□□ -1.04
NUP54-218ENST00000515460 PERM1Q5SV97 790 aa8.57□□□□□ -1.04
NUP54-218ENST00000515460 ELMSAN1Q6PJG2 1045 aa8.57□□□□□ -1.04
NUP54-218ENST00000515460 LENG1Q96BZ8 264 aaPredicted RBP8.57□□□□□ -1.04
NUP54-218ENST00000515460 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.57□□□□□ -1.04
NUP54-218ENST00000515460 LRFN2Q9ULH4 789 aa8.57□□□□□ -1.04
NUP54-218ENST00000515460 NOVA2Q9UNW9 492 aaKnown RBP8.57□□□□□ -1.04
NUP54-218ENST00000515460 RTCBQ9Y3I0 505 aaKnown RBP8.57□□□□□ -1.04
NUP54-218ENST00000515460 FER1L4A9Z1Z3 1794 aa8.57□□□□□ -1.04
NUP54-218ENST00000515460 OPLAHO14841 1288 aa8.56□□□□□ -1.04
NUP54-218ENST00000515460 PLAURQ03405 335 aa8.56□□□□□ -1.04
NUP54-218ENST00000515460 RGL4Q8IZJ4 473 aa8.56□□□□□ -1.04
NUP54-218ENST00000515460 FMR1NBQ8N0W7 255 aaPredicted RBP8.56□□□□□ -1.04
NUP54-218ENST00000515460 CMTR1Q8N1G2 835 aaKnown RBP8.56□□□□□ -1.04
NUP54-218ENST00000515460 LPIN3Q9BQK8 851 aa8.56□□□□□ -1.04
NUP54-218ENST00000515460 SERPINA10Q9UK55 444 aa8.56□□□□□ -1.04
NUP54-218ENST00000515460 SCO2A0A1W2PP80 73 aa8.55□□□□□ -1.04
NUP54-218ENST00000515460 PRMT3O60678 531 aa8.55□□□□□ -1.04
NUP54-218ENST00000515460 NRG1Q02297 640 aaPredicted RBP8.55□□□□□ -1.04
NUP54-218ENST00000515460 MSL1Q68DK7 614 aa8.55□□□□□ -1.04
NUP54-218ENST00000515460 TXNRD3Q86VQ6 643 aa8.55□□□□□ -1.04
NUP54-218ENST00000515460 TRPM4Q8TD43 1214 aa8.55□□□□□ -1.04
NUP54-218ENST00000515460 MYO19Q96H55 970 aa8.55□□□□□ -1.04
NUP54-218ENST00000515460 FKBP5Q13451 457 aaPredicted RBP8.54□□□□□ -1.04
NUP54-218ENST00000515460 ELOAQ14241 798 aaKnown RBP8.54□□□□□ -1.04
NUP54-218ENST00000515460 SWI5Q1ZZU3 235 aa8.54□□□□□ -1.04
NUP54-218ENST00000515460 PRSS36Q5K4E3 855 aa8.54□□□□□ -1.04
NUP54-218ENST00000515460 COX20Q5RI15 118 aa8.54□□□□□ -1.04
NUP54-218ENST00000515460 TREML1Q86YW5 311 aa8.54□□□□□ -1.04
NUP54-218ENST00000515460 KIAA0556O60303 1618 aa8.54□□□□□ -1.04
NUP54-218ENST00000515460 XYLBO75191 536 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms