RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PPME1Q9Y570 386 aa6.53□□□□□ -1.36
NUP54-208ENST00000508604 FAM177BA6PVY3 158 aa6.52□□□□□ -1.37
NUP54-208ENST00000508604 HOXD8P13378 290 aaPredicted RBP6.52□□□□□ -1.37
NUP54-208ENST00000508604 COX20Q5RI15 118 aa6.52□□□□□ -1.37
NUP54-208ENST00000508604 PIK3R5Q8WYR1 880 aa6.52□□□□□ -1.37
NUP54-208ENST00000508604 CEP41Q9BYV8 373 aa6.52□□□□□ -1.37
NUP54-208ENST00000508604 NOVA2Q9UNW9 492 aaKnown RBP6.52□□□□□ -1.37
NUP54-208ENST00000508604 RAXQ9Y2V3 346 aa6.52□□□□□ -1.37
NUP54-208ENST00000508604 KCNMB2Q9Y691 235 aa6.52□□□□□ -1.37
NUP54-208ENST00000508604 SSTR4P31391 388 aa6.51□□□□□ -1.37
NUP54-208ENST00000508604 SETDB1Q15047 1291 aa6.51□□□□□ -1.37
NUP54-208ENST00000508604 SWI5Q1ZZU3 235 aa6.51□□□□□ -1.37
NUP54-208ENST00000508604 STOML1Q9UBI4 398 aa6.51□□□□□ -1.37
NUP54-208ENST00000508604 FNDC3AQ9Y2H6 1198 aaKnown RBP6.51□□□□□ -1.37
NUP54-208ENST00000508604 UBAP1LF5GYI3 381 aa6.5□□□□□ -1.37
NUP54-208ENST00000508604 PAX4O43316 350 aa6.5□□□□□ -1.37
NUP54-208ENST00000508604 SMNDC1O75940 238 aaKnown RBP eCLIP6.5□□□□□ -1.37
NUP54-208ENST00000508604 HYAL2Q12891 473 aa6.5□□□□□ -1.37
NUP54-208ENST00000508604 FKBP5Q13451 457 aaPredicted RBP6.5□□□□□ -1.37
NUP54-208ENST00000508604 CDCA8Q53HL2 280 aa6.5□□□□□ -1.37
NUP54-208ENST00000508604 MCTP1Q6DN14 999 aa6.5□□□□□ -1.37
NUP54-208ENST00000508604 FAM117BQ6P1L5 589 aa6.5□□□□□ -1.37
NUP54-208ENST00000508604 C16orf46Q6P387 395 aa6.5□□□□□ -1.37
NUP54-208ENST00000508604 KRTAP1-3Q8IUG1 177 aa6.5□□□□□ -1.37
NUP54-208ENST00000508604 TRIM33Q9UPN9 1127 aa6.5□□□□□ -1.37
NUP54-208ENST00000508604 DHX15O43143 795 aaKnown RBP6.49□□□□□ -1.37
NUP54-208ENST00000508604 TMEM132AQ24JP5 1023 aa6.49□□□□□ -1.37
NUP54-208ENST00000508604 TTC39BQ5VTQ0 682 aaPredicted RBP6.49□□□□□ -1.37
NUP54-208ENST00000508604 AGGF1Q8N302 714 aaeCLIP6.49□□□□□ -1.37
NUP54-208ENST00000508604 PRIMPOLQ96LW4 560 aa6.49□□□□□ -1.37
NUP54-208ENST00000508604 ACIN1Q9UKV3 1341 aaKnown RBP6.49□□□□□ -1.37
NUP54-208ENST00000508604 IGLV1-40P01703 118 aa6.49□□□□□ -1.37
NUP54-208ENST00000508604 SCNN1AP37088 669 aa6.49□□□□□ -1.37
NUP54-208ENST00000508604 CFAP70Q5T0N1 1121 aa6.49□□□□□ -1.37
NUP54-208ENST00000508604 Q6ZS46 218 aa6.49□□□□□ -1.37
NUP54-208ENST00000508604 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.49□□□□□ -1.37
NUP54-208ENST00000508604 LINC01387J3KSC0 135 aa6.48□□□□□ -1.37
NUP54-208ENST00000508604 PRMT3O60678 531 aa6.48□□□□□ -1.37
NUP54-208ENST00000508604 COBLO75128 1261 aa6.48□□□□□ -1.37
NUP54-208ENST00000508604 CD68P34810 354 aaPredicted RBP6.48□□□□□ -1.37
NUP54-208ENST00000508604 LCE3BQ5TA77 95 aa6.48□□□□□ -1.37
NUP54-208ENST00000508604 CEP135Q66GS9 1140 aa6.48□□□□□ -1.37
NUP54-208ENST00000508604 ACAD11Q709F0 780 aa6.48□□□□□ -1.37
NUP54-208ENST00000508604 ETFBKMTQ8IXQ9 262 aa6.48□□□□□ -1.37
NUP54-208ENST00000508604 OR13H1Q8NG92 308 aa6.48□□□□□ -1.37
NUP54-208ENST00000508604 CDC27P30260 824 aa6.47□□□□□ -1.37
NUP54-208ENST00000508604 GRIK1P39086 918 aa6.47□□□□□ -1.37
NUP54-208ENST00000508604 IRAK1P51617 712 aa6.47□□□□□ -1.37
NUP54-208ENST00000508604 UVSSAQ2YD98 709 aa6.47□□□□□ -1.37
NUP54-208ENST00000508604 COL26A1Q96A83 441 aa6.47□□□□□ -1.37
NUP54-208ENST00000508604 LACRTQ9GZZ8 138 aa6.47□□□□□ -1.37
NUP54-208ENST00000508604 CD97P48960 835 aa6.46□□□□□ -1.37
NUP54-208ENST00000508604 KLHL23Q8NBE8 558 aa6.46□□□□□ -1.37
NUP54-208ENST00000508604 KRTAP4-12Q9BQ66 201 aa6.46□□□□□ -1.37
NUP54-208ENST00000508604 GOLGA2P5Q9HBQ8 144 aa6.46□□□□□ -1.37
NUP54-208ENST00000508604 TXKP42681 527 aa6.45□□□□□ -1.38
NUP54-208ENST00000508604 TRIP4Q15650 581 aaPredicted RBP6.45□□□□□ -1.38
NUP54-208ENST00000508604 UTP4Q969X6 686 aaKnown RBP6.45□□□□□ -1.38
NUP54-208ENST00000508604 ZNF777Q9ULD5 760 aaPredicted RBP6.45□□□□□ -1.38
NUP54-208ENST00000508604 COL17A1Q9UMD9 1497 aaPredicted RBP6.45□□□□□ -1.38
NUP54-208ENST00000508604 BTBD11A6QL63 1104 aa6.45□□□□□ -1.38
NUP54-208ENST00000508604 ZAP70P43403 619 aa6.45□□□□□ -1.38
NUP54-208ENST00000508604 DUOXA2Q1HG44 320 aa6.45□□□□□ -1.38
NUP54-208ENST00000508604 INTS5Q6P9B9 1019 aaKnown RBP6.45□□□□□ -1.38
NUP54-208ENST00000508604 GALNT11Q8NCW6 608 aa6.45□□□□□ -1.38
NUP54-208ENST00000508604 UBL7Q96S82 380 aaPredicted RBP6.45□□□□□ -1.38
NUP54-208ENST00000508604 SAP130Q9H0E3 1048 aa6.45□□□□□ -1.38
NUP54-208ENST00000508604 SART1O43290 800 aaKnown RBP6.44□□□□□ -1.38
NUP54-208ENST00000508604 CDC25BP30305 580 aa6.44□□□□□ -1.38
NUP54-208ENST00000508604 CABP4P57796 275 aa6.44□□□□□ -1.38
NUP54-208ENST00000508604 ATP11AP98196 1134 aa6.44□□□□□ -1.38
NUP54-208ENST00000508604 ELOAQ14241 798 aaKnown RBP6.44□□□□□ -1.38
NUP54-208ENST00000508604 TXNDC11Q6PKC3 985 aa6.44□□□□□ -1.38
NUP54-208ENST00000508604 NCAPG2Q86XI2 1143 aa6.44□□□□□ -1.38
NUP54-208ENST00000508604 ABTB2Q8N961 1025 aa6.44□□□□□ -1.38
NUP54-208ENST00000508604 MKNK1Q9BUB5 465 aa6.44□□□□□ -1.38
NUP54-208ENST00000508604 ABI2Q9NYB9 513 aaPredicted RBP6.44□□□□□ -1.38
NUP54-208ENST00000508604 PTPRAP18433 802 aa6.43□□□□□ -1.38
NUP54-208ENST00000508604 NFIAQ12857 509 aa6.43□□□□□ -1.38
NUP54-208ENST00000508604 FSCN2O14926 492 aa6.42□□□□□ -1.38
NUP54-208ENST00000508604 TGFB1P01137 390 aa6.42□□□□□ -1.38
NUP54-208ENST00000508604 NAA30Q147X3 362 aaPredicted RBP6.42□□□□□ -1.38
NUP54-208ENST00000508604 OCLNQ16625 522 aa6.42□□□□□ -1.38
NUP54-208ENST00000508604 GPR152Q8TDT2 470 aa6.42□□□□□ -1.38
NUP54-208ENST00000508604 RASSF4Q9H2L5 321 aa6.42□□□□□ -1.38
NUP54-208ENST00000508604 SEC31BQ9NQW1 1179 aa6.42□□□□□ -1.38
NUP54-208ENST00000508604 KIAA1324LA8MWY0 1029 aaPredicted RBP6.42□□□□□ -1.38
NUP54-208ENST00000508604 GP2P55259 537 aaKnown RBP6.42□□□□□ -1.38
NUP54-208ENST00000508604 COL13A1Q5TAT6 717 aaPredicted RBP6.42□□□□□ -1.38
NUP54-208ENST00000508604 CARD10Q9BWT7 1032 aa6.42□□□□□ -1.38
NUP54-208ENST00000508604 PBX4Q9BYU1 374 aa6.42□□□□□ -1.38
NUP54-208ENST00000508604 CXXC1Q9P0U4 656 aaPredicted RBP6.42□□□□□ -1.38
NUP54-208ENST00000508604 STIM2Q9P246 746 aa6.42□□□□□ -1.38
NUP54-208ENST00000508604 KIF4AO95239 1232 aa6.41□□□□□ -1.38
NUP54-208ENST00000508604 WISP1O95388 367 aa6.41□□□□□ -1.38
NUP54-208ENST00000508604 RPLP1P05386 114 aaKnown RBP6.41□□□□□ -1.38
NUP54-208ENST00000508604 RNF43Q68DV7 783 aa6.41□□□□□ -1.38
NUP54-208ENST00000508604 ARMC10Q8N2F6 343 aa6.41□□□□□ -1.38
NUP54-208ENST00000508604 TTC16Q8NEE8 873 aa6.41□□□□□ -1.38
NUP54-208ENST00000508604 DBNDD2Q9BQY9 259 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms