RNA–Protein interactions for RNA: ENST00000498020.1

HLA-DMB-262, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 4,569 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-262ENST00000498020 HDAC9Q9UKV0 1011 aa9.44□□□□□ -0.9
HLA-DMB-262ENST00000498020 CYP27B1O15528 508 aa9.44□□□□□ -0.9
HLA-DMB-262ENST00000498020 TRDNQ13061 729 aa9.44□□□□□ -0.9
HLA-DMB-262ENST00000498020 IFIT5Q13325 482 aaKnown RBP9.44□□□□□ -0.9
HLA-DMB-262ENST00000498020 NLGN1Q8N2Q7 840 aa9.44□□□□□ -0.9
HLA-DMB-262ENST00000498020 CCDC191Q8NCU4 936 aa9.44□□□□□ -0.9
HLA-DMB-262ENST00000498020 SNX14Q9Y5W7 946 aa9.44□□□□□ -0.9
HLA-DMB-262ENST00000498020 OVOS2A0A0G2JMS6 1433 aa9.44□□□□□ -0.9
HLA-DMB-262ENST00000498020 NCOA3Q9Y6Q9 1424 aa9.44□□□□□ -0.9
HLA-DMB-262ENST00000498020 XRCC6P12956 609 aaKnown RBP eCLIP9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 PI4K2BQ8TCG2 481 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 EAF2Q96CJ1 260 aaPredicted RBP9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 COPRSQ9NQ92 184 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 FIBPO43427 364 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 TFCP2Q12800 502 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 CREBRFQ8IUR6 639 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 CDC5LQ99459 802 aaKnown RBP9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 CARD10Q9BWT7 1032 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 CTNNA3Q9UI47 895 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 PALD1Q9ULE6 856 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 RALYLQ86SE5 291 aaKnown RBP9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 STX6O43752 255 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 AK2P54819 239 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 TNNI3KQ59H18 835 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 DNAJC10Q8IXB1 793 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 KLHDC4Q8TBB5 520 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 JAG2Q9Y219 1238 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 FPGT-TNNI3KV9GXZ4 949 aa9.43□□□□□ -0.9
HLA-DMB-262ENST00000498020 XRN1Q8IZH2 1706 aaKnown RBP9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 TOPAZ1Q8N9V7 1692 aa9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 HMGB1P09429 215 aaKnown RBP9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 KRT85P78386 507 aa9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 CREB3L3Q68CJ9 461 aa9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 ZSCAN25Q6NSZ9 544 aa9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 DZIP1Q86YF9 867 aaKnown RBP9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 A1BGP04217 495 aa9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 C2CD5Q86YS7 1000 aa9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 TM6SF1Q9BZW5 370 aa9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 TSPY26PQ9H489 355 aa9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 PEAK1Q9H792 1746 aa9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 LDHAL6AQ6ZMR3 332 aa9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 DCCP43146 1447 aa9.42□□□□□ -0.9
HLA-DMB-262ENST00000498020 GOLIM4O00461 696 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 IDH1O75874 414 aaKnown RBP9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 MMP10P09238 476 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 EZH2Q15910 746 aaKnown RBP9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 CCDC43Q96MW1 224 aaKnown RBP9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 FMN2Q9NZ56 1722 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 CPLX1O14810 134 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 IGKV5-2P06315 115 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 ATP5JP18859 108 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 TXNRD1Q16881 649 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 MCMDC2Q4G0Z9 681 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 LARP6Q9BRS8 491 aaKnown RBP9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 LSG1Q9H089 658 aaKnown RBP9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 PIK3C2AO00443 1686 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 H7C1D1 291 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 PPIP5K2O43314 1243 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 ZSCAN22P10073 491 aaPredicted RBP9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 SLC4A8Q2Y0W8 1093 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 NEK1Q96PY6 1258 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 EYA2O00167 538 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 GJB2P29033 226 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 STK3Q13188 491 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 CUL4AQ13619 759 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 TSR1Q2NL82 804 aaKnown RBP9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 NIM1KQ8IY84 436 aa9.41□□□□□ -0.9
HLA-DMB-262ENST00000498020 BECN2A8MW95 431 aa9.4□□□□□ -0.9
HLA-DMB-262ENST00000498020 TPD52L1Q16890 204 aaPredicted RBP9.4□□□□□ -0.9
HLA-DMB-262ENST00000498020 RUFY3Q7L099 469 aa9.4□□□□□ -0.9
HLA-DMB-262ENST00000498020 GOLGA6L1Q8N7Z2 621 aa9.4□□□□□ -0.9
HLA-DMB-262ENST00000498020 ZNF142P52746 1687 aaPredicted RBP9.4□□□□□ -0.9
HLA-DMB-262ENST00000498020 HEG1Q9ULI3 1381 aa9.4□□□□□ -0.9
HLA-DMB-262ENST00000498020 ANKRD18BA2A2Z9 1011 aa9.4□□□□□ -0.9
HLA-DMB-262ENST00000498020 BRD1O95696 1058 aa9.4□□□□□ -0.9
HLA-DMB-262ENST00000498020 ANKRD18AQ8IVF6 992 aa9.4□□□□□ -0.9
HLA-DMB-262ENST00000498020 DBNDD2Q9BQY9 259 aa9.4□□□□□ -0.9
HLA-DMB-262ENST00000498020 SALL3Q9BXA9 1300 aa9.4□□□□□ -0.9
HLA-DMB-262ENST00000498020 PES1O00541 588 aaKnown RBP9.4□□□□□ -0.91
HLA-DMB-262ENST00000498020 KDM4AO75164 1064 aa9.4□□□□□ -0.91
HLA-DMB-262ENST00000498020 SASH1O94885 1247 aa9.4□□□□□ -0.91
HLA-DMB-262ENST00000498020 RNF214Q8ND24 703 aa9.4□□□□□ -0.91
HLA-DMB-262ENST00000498020 BICD2Q8TD16 824 aa9.4□□□□□ -0.91
HLA-DMB-262ENST00000498020 FAM227BQ96M60 508 aa9.4□□□□□ -0.91
HLA-DMB-262ENST00000498020 RNF181Q9P0P0 153 aa9.4□□□□□ -0.91
HLA-DMB-262ENST00000498020 LOC102724428A0A0B4J2F2 783 aa9.39□□□□□ -0.91
HLA-DMB-262ENST00000498020 A0A0U1RQG5 324 aaPredicted RBP9.39□□□□□ -0.91
HLA-DMB-262ENST00000498020 SYCE3A1L190 88 aa9.39□□□□□ -0.91
HLA-DMB-262ENST00000498020 GOLGA6L19H0YKK7 550 aa9.39□□□□□ -0.91
HLA-DMB-262ENST00000498020 SIK1P57059 783 aa9.39□□□□□ -0.91
HLA-DMB-262ENST00000498020 ZSCAN23Q3MJ62 389 aa9.39□□□□□ -0.91
HLA-DMB-262ENST00000498020 NYXQ9GZU5 481 aa9.39□□□□□ -0.91
HLA-DMB-262ENST00000498020 USP42Q9H9J4 1324 aaKnown RBP9.39□□□□□ -0.91
HLA-DMB-262ENST00000498020 ZFYP08048 801 aaPredicted RBP9.39□□□□□ -0.91
HLA-DMB-262ENST00000498020 DPP8Q6V1X1 898 aaPredicted RBP9.39□□□□□ -0.91
HLA-DMB-262ENST00000498020 NFXL1Q6ZNB6 911 aa9.39□□□□□ -0.91
HLA-DMB-262ENST00000498020 TTLL7Q6ZT98 887 aa9.39□□□□□ -0.91
HLA-DMB-262ENST00000498020 LMBRD1Q9NUN5 540 aa9.39□□□□□ -0.91
HLA-DMB-262ENST00000498020 PAG1Q9NWQ8 432 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms