RNA–Protein interactions for RNA: ENST00000472398.5

TTC3-214, Transcript of tetratricopeptide repeat domain 3, human

TSL 1 (best)

Gene TTC3, Length 2,305 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-214	ENST00000472398	SCUBE3	Q8IX30	993 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	PRR7	Q8TB68	274 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	JARID2	Q92833	1246 aa	Predicted RBP	3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	CDHR1	Q96JP9	859 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	C12orf49	Q9H741	205 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	TYW1	Q9NV66	732 aa	Known RBP	3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	SUN2	Q9UH99	717 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	RABL2B	Q9UNT1	228 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	TSPAN6	O43657	245 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	FMNL1	O95466	1100 aa	Predicted RBP	3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	PIK3CA	P42336	1068 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	CTDSPL2	Q05D32	466 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	PTK7	Q13308	1070 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	PLEKHG4	Q58EX7	1191 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	RC3H1	Q5TC82	1133 aa	Known RBP	3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	MSL1	Q68DK7	614 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	BLOC1S3	Q6QNY0	202 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	RNF19B	Q6ZMZ0	732 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	C14orf80	Q86SX3	495 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	TMEM87A	Q8NBN3	555 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	UHMK1	Q8TAS1	419 aa	Known RBP	3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	ATRIP	Q8WXE1	791 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	CFAP53	Q96M91	514 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	PAIP2	Q9BPZ3	127 aa	Known RBP	3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	USB1	Q9BQ65	265 aa	Known RBP	3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	CCDC94	Q9BW85	323 aa	Predicted RBP	3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	RMI1	Q9H9A7	625 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	ODF2L	Q9ULJ1	636 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398	RABGAP1	Q9Y3P9	1069 aa		3.92	□□□□□ -1.78
TTC3-214	ENST00000472398		A6NCN8	305 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	BOLA2-SMG1P6	H3BVE0	249 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398		K7ELQ4	463 aa	Predicted RBP	3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	MPHOSPH10	O00566	681 aa	Known RBP	3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	PIP5K1C	O60331	668 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	GLUL	P15104	373 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	FOSL1	P15407	271 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	MMP16	P51512	607 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	TAF11	Q15544	211 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	GRAMD1B	Q3KR37	738 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	SPECC1	Q5M775	1068 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	GJC2	Q5T442	439 aa	Predicted RBP	3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	JAKMIP3	Q5VZ66	844 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	TBC1D9	Q6ZT07	1266 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	CATIP	Q7Z7H3	387 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	MYO1H	Q8N1T3	1032 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	E2F7	Q96AV8	911 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	ALG2	Q9H553	416 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	PCDHGB7	Q9Y5F8	929 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	PPP2R3B	Q9Y5P8	575 aa		3.91	□□□□□ -1.78
TTC3-214	ENST00000472398	PLIN1	O60240	522 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	DXO	O77932	396 aa	Known RBP	3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	SCGB1D2	O95969	90 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	FGR	P09769	529 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	JUND	P17535	347 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	RASA1	P20936	1047 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	ADD2	P35612	726 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	TRPC1	P48995	793 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	MECOM	Q03112	1051 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	FAM69C	Q0P6D2	419 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	DALRD3	Q5D0E6	543 aa	Known RBP	3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	TJAP1	Q5JTD0	557 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	KANK4	Q5T7N3	995 aa	Predicted RBP	3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	PPP4R4	Q6NUP7	873 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	PDXDC2P	Q6P474	469 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	WAPL	Q7Z5K2	1190 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	TEX19	Q8NA77	164 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	APPL2	Q8NEU8	664 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	SYMPK	Q92797	1274 aa	Known RBP	3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	KCTD12	Q96CX2	325 aa	Known RBP	3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	XPO4	Q9C0E2	1151 aa	Known RBP	3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	TMX1	Q9H3N1	280 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	HMX1	Q9NP08	348 aa	Predicted RBP	3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	MKS1	Q9NXB0	559 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	LUZP4	Q9P127	313 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	NDUFB9	Q9Y6M9	179 aa		3.9	□□□□□ -1.78
TTC3-214	ENST00000472398	PABPN1L	A6NDY0	278 aa	Known RBP	3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	C19orf81	C9J6K1	198 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	F12	P00748	615 aa	Predicted RBP	3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	KRT18	P05783	430 aa	Known RBP	3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	CTH	P32929	405 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	SLC20A2	Q08357	652 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	ZNF211	Q13398	564 aa	Predicted RBP	3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	SERINC3	Q13530	473 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	DDB1	Q16531	1140 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	PTPRN	Q16849	979 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	ZNF394	Q53GI3	561 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	BRDT	Q58F21	947 aa	Predicted RBP	3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	DNTTIP2	Q5QJE6	756 aa	Known RBP	3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	KIAA1614	Q5VZ46	1190 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	CDC37L1	Q7L3B6	337 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	SNX32	Q86XE0	403 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	DZIP3	Q86Y13	1208 aa	Known RBP	3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	FAM160A2	Q8N612	972 aa	Predicted RBP	3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	VMP1	Q96GC9	406 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	FAM210A	Q96ND0	272 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	FRMD6	Q96NE9	622 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	LGR6	Q9HBX8	967 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	PRM3	Q9NNZ6	103 aa		3.9	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms