RNA–Protein interactions for RNA: ENST00000472398.5

TTC3-214, Transcript of tetratricopeptide repeat domain 3, human

TSL 1 (best)

Gene TTC3, Length 2,305 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-214	ENST00000472398	POTED	Q86YR6	584 aa		12.47	□□□□□ -0.41
TTC3-214	ENST00000472398	POTEH	Q6S545	545 aa		9.37	□□□□□ -0.91
TTC3-214	ENST00000472398	AEBP2	Q6ZN18	517 aa	Predicted RBP	9.33	□□□□□ -0.92
TTC3-214	ENST00000472398	CHIC1	Q5VXU3	224 aa		9.28	□□□□□ -0.92
TTC3-214	ENST00000472398	CACNB1	Q02641	598 aa	Predicted RBP	8.88	□□□□□ -0.99
TTC3-214	ENST00000472398	MSH5	O43196	834 aa		8.88	□□□□□ -0.99
TTC3-214	ENST00000472398	PLSCR2	Q9NRY7	297 aa		8.7	□□□□□ -1.02
TTC3-214	ENST00000472398	SENP3	Q9H4L4	574 aa	Predicted RBP	8.53	□□□□□ -1.04
TTC3-214	ENST00000472398	PHF23	Q9BUL5	403 aa	Predicted RBP	8.15	□□□□□ -1.1
TTC3-214	ENST00000472398	FOXD1	Q16676	465 aa		8.11	□□□□□ -1.11
TTC3-214	ENST00000472398	SP7	Q8TDD2	431 aa	Predicted RBP	7.67	□□□□□ -1.18
TTC3-214	ENST00000472398	PLPPR3	Q6T4P5	718 aa		7.58	□□□□□ -1.2
TTC3-214	ENST00000472398	PCDH10	Q9P2E7	1040 aa		7.48	□□□□□ -1.21
TTC3-214	ENST00000472398	LHX8	Q68G74	356 aa		7.12	□□□□□ -1.27
TTC3-214	ENST00000472398	PPP6R1	Q9UPN7	881 aa		7.12	□□□□□ -1.27
TTC3-214	ENST00000472398	ADRA2B	P18089	450 aa		7.1	□□□□□ -1.27
TTC3-214	ENST00000472398	C1QBP	Q07021	282 aa	Known RBP	7.05	□□□□□ -1.28
TTC3-214	ENST00000472398	RNF39	Q9H2S5	420 aa		6.99	□□□□□ -1.29
TTC3-214	ENST00000472398	PIAS4	Q8N2W9	510 aa	Predicted RBP	6.88	□□□□□ -1.31
TTC3-214	ENST00000472398	SLC24A1	O60721	1099 aa		6.85	□□□□□ -1.31
TTC3-214	ENST00000472398	POTEM	A6NI47	508 aa		6.76	□□□□□ -1.33
TTC3-214	ENST00000472398	PPP4R3CP	Q6ZMV5	832 aa		6.68	□□□□□ -1.34
TTC3-214	ENST00000472398	KCNA4	P22459	653 aa		6.67	□□□□□ -1.34
TTC3-214	ENST00000472398	POTEG	Q6S5H5	508 aa		6.65	□□□□□ -1.35
TTC3-214	ENST00000472398	NCBP3	Q53F19	620 aa	Known RBP	6.56	□□□□□ -1.36
TTC3-214	ENST00000472398	SCAF1	Q9H7N4	1312 aa	Known RBP	6.53	□□□□□ -1.36
TTC3-214	ENST00000472398	CNKSR2	Q8WXI2	1034 aa		6.49	□□□□□ -1.37
TTC3-214	ENST00000472398	NPM3	O75607	178 aa	Known RBP	6.46	□□□□□ -1.38
TTC3-214	ENST00000472398	DNAJC5B	Q9UF47	199 aa		6.41	□□□□□ -1.38
TTC3-214	ENST00000472398	CHRDL2	Q6WN34	429 aa		6.39	□□□□□ -1.39
TTC3-214	ENST00000472398	MAPK8IP2	Q13387	824 aa	Predicted RBP	6.39	□□□□□ -1.39
TTC3-214	ENST00000472398	SLC4A1AP	Q9BWU0	796 aa	Known RBP	6.38	□□□□□ -1.39
TTC3-214	ENST00000472398	DMRT2	Q9Y5R5	561 aa		6.35	□□□□□ -1.39
TTC3-214	ENST00000472398	RNF216	Q9NWF9	866 aa	Predicted RBP	6.34	□□□□□ -1.39
TTC3-214	ENST00000472398	EHMT2	Q96KQ7	1210 aa		6.31	□□□□□ -1.4
TTC3-214	ENST00000472398	HOXD11	P31277	338 aa	Predicted RBP	6.3	□□□□□ -1.4
TTC3-214	ENST00000472398	HAX1	O00165	279 aa		6.25	□□□□□ -1.41
TTC3-214	ENST00000472398	CSRNP3	Q8WYN3	585 aa		6.25	□□□□□ -1.41
TTC3-214	ENST00000472398	DAXX	Q9UER7	740 aa	Predicted RBP	6.22	□□□□□ -1.41
TTC3-214	ENST00000472398	RTN4	Q9NQC3	1192 aa	Known RBP	6.17	□□□□□ -1.42
TTC3-214	ENST00000472398	ZBTB22	O15209	634 aa		6.16	□□□□□ -1.42
TTC3-214	ENST00000472398	FOXD4L1	Q9NU39	408 aa		6.13	□□□□□ -1.43
TTC3-214	ENST00000472398	SLC4A2	P04920	1241 aa		6.08	□□□□□ -1.44
TTC3-214	ENST00000472398	PRKCSH	P14314	528 aa	Predicted RBP	6.01	□□□□□ -1.45
TTC3-214	ENST00000472398	APLP2	Q06481	763 aa		5.99	□□□□□ -1.45
TTC3-214	ENST00000472398	MYCN	P04198	464 aa	Predicted RBP	5.98	□□□□□ -1.45
TTC3-214	ENST00000472398	LOC100996750	A0A140TA64	210 aa		5.97	□□□□□ -1.45
TTC3-214	ENST00000472398	KRTAP4-6	Q9BYQ5	205 aa		5.97	□□□□□ -1.45
TTC3-214	ENST00000472398	CDAN1	Q8IWY9	1227 aa		5.96	□□□□□ -1.46
TTC3-214	ENST00000472398	RBM42	Q9BTD8	480 aa	Known RBP	5.96	□□□□□ -1.46
TTC3-214	ENST00000472398	ATXN8OS	P0DMR3	200 aa		5.96	□□□□□ -1.46
TTC3-214	ENST00000472398	MMRN1	Q13201	1228 aa		5.95	□□□□□ -1.46
TTC3-214	ENST00000472398	DCAF8L1	A6NGE4	600 aa		5.92	□□□□□ -1.46
TTC3-214	ENST00000472398	AMER1	Q5JTC6	1135 aa	Predicted RBP	5.92	□□□□□ -1.46
TTC3-214	ENST00000472398	TTBK1	Q5TCY1	1321 aa	Predicted RBP	5.92	□□□□□ -1.46
TTC3-214	ENST00000472398	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	5.9	□□□□□ -1.47	3e-7	■■□□□ 12.4
TTC3-214	ENST00000472398	MYT1	Q01538	1121 aa		5.89	□□□□□ -1.47
TTC3-214	ENST00000472398		U3KPZ7	1027 aa	Predicted RBP	5.87	□□□□□ -1.47
TTC3-214	ENST00000472398	PELP1	Q8IZL8	1130 aa	Known RBP	5.86	□□□□□ -1.47
TTC3-214	ENST00000472398	TIMELESS	Q9UNS1	1208 aa		5.86	□□□□□ -1.47
TTC3-214	ENST00000472398	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	5.86	□□□□□ -1.47
TTC3-214	ENST00000472398	HNRNPUL2	Q1KMD3	747 aa	Known RBP	5.86	□□□□□ -1.47
TTC3-214	ENST00000472398	SAMD1	Q6SPF0	538 aa	Predicted RBP	5.84	□□□□□ -1.47
TTC3-214	ENST00000472398	ERICH6	Q7L0X2	663 aa		5.83	□□□□□ -1.48
TTC3-214	ENST00000472398	ARX	Q96QS3	562 aa		5.82	□□□□□ -1.48
TTC3-214	ENST00000472398	ATF5	Q9Y2D1	282 aa	Predicted RBP	5.77	□□□□□ -1.49
TTC3-214	ENST00000472398	XP32	Q5T750	250 aa		5.76	□□□□□ -1.49
TTC3-214	ENST00000472398	TULP1	O00294	542 aa	Predicted RBP	5.73	□□□□□ -1.49
TTC3-214	ENST00000472398	TAOK2	Q9UL54	1235 aa		5.7	□□□□□ -1.5
TTC3-214	ENST00000472398	KLHL34	Q8N239	644 aa		5.68	□□□□□ -1.5
TTC3-214	ENST00000472398	ZNF219	Q9P2Y4	722 aa	Predicted RBP	5.68	□□□□□ -1.5
TTC3-214	ENST00000472398	GABBR2	O75899	941 aa		5.66	□□□□□ -1.5
TTC3-214	ENST00000472398	SPNS2	Q8IVW8	549 aa		5.66	□□□□□ -1.5
TTC3-214	ENST00000472398	OTUD5	Q96G74	571 aa		5.65	□□□□□ -1.5
TTC3-214	ENST00000472398	SPINK5	Q9NQ38	1064 aa	Predicted RBP	5.63	□□□□□ -1.51
TTC3-214	ENST00000472398	RANGAP1	P46060	587 aa	Predicted RBP	5.62	□□□□□ -1.51
TTC3-214	ENST00000472398	HOMEZ	Q8IX15	550 aa		5.62	□□□□□ -1.51
TTC3-214	ENST00000472398	EIF5B	O60841	1220 aa	Known RBP	5.6	□□□□□ -1.51
TTC3-214	ENST00000472398	TPRN	Q4KMQ1	711 aa		5.6	□□□□□ -1.51
TTC3-214	ENST00000472398	DSG3	P32926	999 aa		5.59	□□□□□ -1.51
TTC3-214	ENST00000472398	PIP4P2	Q8N4L2	257 aa		5.59	□□□□□ -1.51
TTC3-214	ENST00000472398	FKBP8	Q14318	412 aa		5.58	□□□□□ -1.52
TTC3-214	ENST00000472398	PODXL2	Q9NZ53	605 aa		5.58	□□□□□ -1.52
TTC3-214	ENST00000472398	CAPN15	O75808	1086 aa		5.56	□□□□□ -1.52
TTC3-214	ENST00000472398	TRH	P20396	242 aa	Predicted RBP	5.56	□□□□□ -1.52
TTC3-214	ENST00000472398	MKRN4P	Q13434	485 aa	Predicted RBP	5.56	□□□□□ -1.52
TTC3-214	ENST00000472398	BCAN	Q96GW7	911 aa		5.56	□□□□□ -1.52
TTC3-214	ENST00000472398	CLCN6	P51797	869 aa		5.54	□□□□□ -1.52
TTC3-214	ENST00000472398	POLA2	Q14181	598 aa		5.54	□□□□□ -1.52
TTC3-214	ENST00000472398	ZBTB12	Q9Y330	459 aa	Predicted RBP	5.53	□□□□□ -1.52
TTC3-214	ENST00000472398	PLEKHG5	O94827	1062 aa		5.52	□□□□□ -1.53
TTC3-214	ENST00000472398	FBLN2	P98095	1184 aa		5.52	□□□□□ -1.53
TTC3-214	ENST00000472398	PROM2	Q8N271	834 aa		5.51	□□□□□ -1.53
TTC3-214	ENST00000472398	PLCB2	Q00722	1185 aa		5.49	□□□□□ -1.53
TTC3-214	ENST00000472398	GTF3C3	Q9Y5Q9	886 aa		5.49	□□□□□ -1.53
TTC3-214	ENST00000472398	EVX2	Q03828	476 aa		5.48	□□□□□ -1.53
TTC3-214	ENST00000472398	SPDYE4	A6NLX3	237 aa		5.47	□□□□□ -1.53
TTC3-214	ENST00000472398	ABCB7	O75027	752 aa		5.46	□□□□□ -1.54
TTC3-214	ENST00000472398	MAMSTR	Q6ZN01	415 aa		5.43	□□□□□ -1.54
TTC3-214	ENST00000472398	NPM2	Q86SE8	214 aa	Known RBP	5.43	□□□□□ -1.54

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms