RNA–Protein interactions for RNA: ENST00000471809.5

IFT27-208, Transcript of intraflagellar transport 27, human

TSL 5

Gene IFT27, Length 6,475 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IFT27-208	ENST00000471809	VIM	P08670	466 aa	Known RBP	13.37	□□□□□ -0.27
IFT27-208	ENST00000471809	TTF1	Q15361	905 aa	Predicted RBP	13.37	□□□□□ -0.27
IFT27-208	ENST00000471809	HEATR3	Q7Z4Q2	680 aa		13.37	□□□□□ -0.27
IFT27-208	ENST00000471809	TRMT112	Q9UI30	125 aa	Known RBP	13.37	□□□□□ -0.27
IFT27-208	ENST00000471809	TACC1	O75410	805 aa		13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	ERCC3	P19447	782 aa		13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	SEPT6	Q14141	434 aa		13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	PPP1R12C	Q9BZL4	782 aa		13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	CWC25	Q9NXE8	425 aa	Predicted RBP	13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	F13A1	P00488	732 aa		13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	IRX5	P78411	483 aa	Predicted RBP	13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	PPP1R42	Q7Z4L9	355 aa		13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	RAB3IL1	Q8TBN0	382 aa		13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	NCOA7	Q8NI08	942 aa		13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	RXRA	P19793	462 aa		13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	KANK3	Q6NY19	840 aa		13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	BMP2KL	Q5H9B9	411 aa		13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	NME9	Q86XW9	330 aa		13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	ZNF692	Q9BU19	519 aa	Predicted RBP	13.36	□□□□□ -0.27
IFT27-208	ENST00000471809	FAM114A2	Q9NRY5	505 aa		13.36	□□□□□ -0.27
IFT27-208	ENST00000471809		A0A1B0GUL7	405 aa		13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	PLCB3	Q01970	1234 aa		13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	PPP2R3A	Q06190	1150 aa		13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	PDE1C	Q14123	709 aa	Predicted RBP	13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	MRPS27	Q92552	414 aa	Known RBP	13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	BUB1B	O60566	1050 aa	Predicted RBP	13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	CCT6A	P40227	531 aa	Known RBP	13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	CLNS1A	P54105	237 aa	Known RBP	13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	ECHDC1	Q9NTX5	307 aa		13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	TMOD2	Q9NZR1	351 aa		13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	EVC	P57679	992 aa		13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	NUCB1	Q02818	461 aa		13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	CEP85L	Q5SZL2	805 aa		13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	RPUSD2	Q8IZ73	545 aa	Known RBP	13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	RIOK3	O14730	519 aa	Known RBP	13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	NOL3	O60936	208 aa	Known RBP	13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	TBCA	O75347	108 aa	Known RBP	13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	STARD3NL	O95772	234 aa		13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	MAP7D1	Q3KQU3	841 aa		13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	FAM212A	Q96EL1	285 aa		13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	SAMD15	Q9P1V8	674 aa		13.35	□□□□□ -0.27
IFT27-208	ENST00000471809	FBLN1	P23142	703 aa		13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	ASIC1	P78348	528 aa		13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	CTAGE1	Q96RT6	745 aa		13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	TNN	Q9UQP3	1299 aa		13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	CPSF2	Q9P2I0	782 aa	Known RBP	13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	ECM2	O94769	699 aa	Predicted RBP	13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	CCDC174	Q6PII3	467 aa		13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	MIPOL1	Q8TD10	442 aa		13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	PABPN1L	A6NDY0	278 aa	Known RBP	13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	PCK1	P35558	622 aa		13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	PPP1R7	Q15435	360 aa		13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	ELF2	Q15723	593 aa		13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	RNF41	Q9H4P4	317 aa	Predicted RBP	13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	ANAPC4	Q9UJX5	808 aa		13.34	□□□□□ -0.27
IFT27-208	ENST00000471809	SEC24B	O95487	1268 aa		13.33	□□□□□ -0.27
IFT27-208	ENST00000471809	KIF5A	Q12840	1032 aa		13.33	□□□□□ -0.27
IFT27-208	ENST00000471809	C8orf34	Q49A92	452 aa		13.33	□□□□□ -0.27
IFT27-208	ENST00000471809	HDX	Q7Z353	690 aa		13.33	□□□□□ -0.27
IFT27-208	ENST00000471809	RMND1	Q9NWS8	449 aa		13.33	□□□□□ -0.27
IFT27-208	ENST00000471809	RBM8A	Q9Y5S9	174 aa	Known RBP	13.33	□□□□□ -0.27
IFT27-208	ENST00000471809	WDR66	Q8TBY9	1149 aa		13.33	□□□□□ -0.28
IFT27-208	ENST00000471809	AFAP1L1	Q8TED9	768 aa		13.33	□□□□□ -0.28
IFT27-208	ENST00000471809	TSC1	Q92574	1164 aa		13.33	□□□□□ -0.28
IFT27-208	ENST00000471809	RBSN	Q9H1K0	784 aa		13.33	□□□□□ -0.28
IFT27-208	ENST00000471809	POLA1	P09884	1462 aa	Predicted RBP	13.33	□□□□□ -0.28
IFT27-208	ENST00000471809	RPGRIP1L	Q68CZ1	1315 aa		13.33	□□□□□ -0.28
IFT27-208	ENST00000471809	CA8	P35219	290 aa		13.33	□□□□□ -0.28
IFT27-208	ENST00000471809	SREK1	Q8WXA9	508 aa	Known RBP	13.33	□□□□□ -0.28
IFT27-208	ENST00000471809	PRDM11	Q9NQV5	511 aa		13.33	□□□□□ -0.28
IFT27-208	ENST00000471809	PCDHB15	Q9Y5E8	787 aa		13.33	□□□□□ -0.28
IFT27-208	ENST00000471809	KSR1	Q8IVT5	923 aa		13.33	□□□□□ -0.28
IFT27-208	ENST00000471809	DNAI2	Q9GZS0	605 aa		13.33	□□□□□ -0.28
IFT27-208	ENST00000471809	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	NUDT16	Q96DE0	195 aa	Known RBP	13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	TMOD3	Q9NYL9	352 aa		13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	NDC80	O14777	642 aa		13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	APOBR	Q0VD83	1088 aa		13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	WTAP	Q15007	396 aa		13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	MBIP	Q9NS73	344 aa		13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	MCM7	P33993	719 aa		13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	CTNND2	Q9UQB3	1225 aa		13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	TTLL12	Q14166	644 aa	Predicted RBP	13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	ATP11A	P98196	1134 aa		13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	IFIT1B	Q5T764	474 aa	Known RBP	13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	STMN2	Q93045	179 aa		13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	STX8	Q9UNK0	236 aa		13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	SSX2IP	Q9Y2D8	614 aa		13.32	□□□□□ -0.28
IFT27-208	ENST00000471809	CADPS	Q9ULU8	1353 aa		13.31	□□□□□ -0.28
IFT27-208	ENST00000471809	CALM1	P0DP23	149 aa		13.31	□□□□□ -0.28
IFT27-208	ENST00000471809	CALM2	P0DP24	149 aa		13.31	□□□□□ -0.28
IFT27-208	ENST00000471809	CALM3	P0DP25	149 aa		13.31	□□□□□ -0.28
IFT27-208	ENST00000471809	INTS8	Q75QN2	995 aa	Known RBP	13.31	□□□□□ -0.28
IFT27-208	ENST00000471809	CCDC42	Q96M95	316 aa		13.31	□□□□□ -0.28
IFT27-208	ENST00000471809	STAC3	Q96MF2	364 aa		13.31	□□□□□ -0.28
IFT27-208	ENST00000471809	TTC36	A6NLP5	189 aa		13.31	□□□□□ -0.28
IFT27-208	ENST00000471809	CPA1	P15085	419 aa		13.31	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms