RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 PLA2G4EQ3MJ16 856 aa7.3□□□□□ -1.24
VPS13A-210ENST00000471439 GPAT2Q6NUI2 795 aa7.3□□□□□ -1.24
VPS13A-210ENST00000471439 ZNF417Q8TAU3 575 aa7.3□□□□□ -1.24
VPS13A-210ENST00000471439 ZNF587Q96SQ5 575 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-210ENST00000471439 RTCBQ9Y3I0 505 aaKnown RBP7.3□□□□□ -1.24
VPS13A-210ENST00000471439 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-210ENST00000471439 PREX1Q8TCU6 1659 aa7.3□□□□□ -1.24
VPS13A-210ENST00000471439 EPRSP07814 1512 aaKnown RBP7.3□□□□□ -1.24
VPS13A-210ENST00000471439 ARID4BQ4LE39 1312 aaPredicted RBP7.29□□□□□ -1.24
VPS13A-210ENST00000471439 SASH3O75995 380 aa7.29□□□□□ -1.24
VPS13A-210ENST00000471439 MLLT1Q03111 559 aaPredicted RBP7.29□□□□□ -1.24
VPS13A-210ENST00000471439 COL9A3Q14050 684 aaPredicted RBP7.29□□□□□ -1.24
VPS13A-210ENST00000471439 COL26A1Q96A83 441 aa7.29□□□□□ -1.24
VPS13A-210ENST00000471439 PNMA5Q96PV4 448 aa7.29□□□□□ -1.24
VPS13A-210ENST00000471439 DNAJB12Q9NXW2 375 aaKnown RBP7.29□□□□□ -1.24
VPS13A-210ENST00000471439 SLC6A14Q9UN76 642 aa7.29□□□□□ -1.24
VPS13A-210ENST00000471439 KCNMB2Q9Y691 235 aa7.29□□□□□ -1.24
VPS13A-210ENST00000471439 FAM229AH3BQW9 127 aa7.28□□□□□ -1.24
VPS13A-210ENST00000471439 GNB5O14775 395 aa7.28□□□□□ -1.24
VPS13A-210ENST00000471439 PLAURQ03405 335 aa7.28□□□□□ -1.24
VPS13A-210ENST00000471439 NEUROD1Q13562 356 aa7.28□□□□□ -1.24
VPS13A-210ENST00000471439 CMTR1Q8N1G2 835 aaKnown RBP7.28□□□□□ -1.24
VPS13A-210ENST00000471439 ZBTB42B2RXF5 422 aa7.27□□□□□ -1.25
VPS13A-210ENST00000471439 EPB42P16452 691 aa7.27□□□□□ -1.25
VPS13A-210ENST00000471439 ALAS2P22557 587 aa7.27□□□□□ -1.25
VPS13A-210ENST00000471439 MTMR3Q13615 1198 aa7.27□□□□□ -1.25
VPS13A-210ENST00000471439 PHLDB3Q6NSJ2 640 aa7.27□□□□□ -1.25
VPS13A-210ENST00000471439 C20orf204Q6ZNR8 217 aa7.27□□□□□ -1.25
VPS13A-210ENST00000471439 ATCAYQ86WG3 371 aa7.27□□□□□ -1.25
VPS13A-210ENST00000471439 MICALL1Q8N3F8 863 aa7.27□□□□□ -1.25
VPS13A-210ENST00000471439 FGD5Q6ZNL6 1462 aa7.27□□□□□ -1.25
VPS13A-210ENST00000471439 CUL7Q14999 1698 aa7.27□□□□□ -1.25
VPS13A-210ENST00000471439 PTCD1O75127 700 aaKnown RBP7.26□□□□□ -1.25
VPS13A-210ENST00000471439 PPP1R15AO75807 674 aaPredicted RBP7.26□□□□□ -1.25
VPS13A-210ENST00000471439 RARAP10276 462 aa7.26□□□□□ -1.25
VPS13A-210ENST00000471439 NUDT8Q8WV74 236 aa7.26□□□□□ -1.25
VPS13A-210ENST00000471439 PLVAPQ9BX97 442 aa7.26□□□□□ -1.25
VPS13A-210ENST00000471439 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.26□□□□□ -1.25
VPS13A-210ENST00000471439 XYLBO75191 536 aa7.25□□□□□ -1.25
VPS13A-210ENST00000471439 IGHA1P01876 353 aa7.25□□□□□ -1.25
VPS13A-210ENST00000471439 BRD2P25440 801 aaKnown RBP7.25□□□□□ -1.25
VPS13A-210ENST00000471439 SSFA2P28290 1259 aa7.25□□□□□ -1.25
VPS13A-210ENST00000471439 ZAP70P43403 619 aa7.25□□□□□ -1.25
VPS13A-210ENST00000471439 HFE2Q6ZVN8 426 aa7.25□□□□□ -1.25
VPS13A-210ENST00000471439 DHX32Q7L7V1 743 aaKnown RBP7.25□□□□□ -1.25
VPS13A-210ENST00000471439 RETREG2Q8NC44 543 aa7.25□□□□□ -1.25
VPS13A-210ENST00000471439 ABCC2Q92887 1545 aa7.25□□□□□ -1.25
VPS13A-210ENST00000471439 PROCP04070 461 aa7.24□□□□□ -1.25
VPS13A-210ENST00000471439 NID1P14543 1247 aa7.24□□□□□ -1.25
VPS13A-210ENST00000471439 CPB1P15086 417 aa7.24□□□□□ -1.25
VPS13A-210ENST00000471439 CHRNA4P43681 627 aa7.24□□□□□ -1.25
VPS13A-210ENST00000471439 PSAPL1Q6NUJ1 521 aa7.24□□□□□ -1.25
VPS13A-210ENST00000471439 GPR152Q8TDT2 470 aa7.24□□□□□ -1.25
VPS13A-210ENST00000471439 ZNF335Q9H4Z2 1342 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-210ENST00000471439 FAM35AQ86V20 835 aa7.23□□□□□ -1.25
VPS13A-210ENST00000471439 SPOCK3Q9BQ16 436 aa7.23□□□□□ -1.25
VPS13A-210ENST00000471439 JPH1Q9HDC5 661 aaPredicted RBP7.23□□□□□ -1.25
VPS13A-210ENST00000471439 STIM2Q9P246 746 aa7.23□□□□□ -1.25
VPS13A-210ENST00000471439 ADAMTS12P58397 1594 aa7.23□□□□□ -1.25
VPS13A-210ENST00000471439 MMP20O60882 483 aa7.22□□□□□ -1.25
VPS13A-210ENST00000471439 MPSTP25325 297 aa7.22□□□□□ -1.25
VPS13A-210ENST00000471439 PERM1Q5SV97 790 aa7.22□□□□□ -1.25
VPS13A-210ENST00000471439 GTF3C2Q8WUA4 911 aaPredicted RBP7.22□□□□□ -1.25
VPS13A-210ENST00000471439 NSUN5Q96P11 429 aaKnown RBP7.22□□□□□ -1.25
VPS13A-210ENST00000471439 LPIN3Q9BQK8 851 aa7.22□□□□□ -1.25
VPS13A-210ENST00000471439 ABCA5Q8WWZ7 1642 aa7.21□□□□□ -1.26
VPS13A-210ENST00000471439 A6NHS1 94 aa7.21□□□□□ -1.26
VPS13A-210ENST00000471439 MAP3K6O95382 1288 aa7.21□□□□□ -1.26
VPS13A-210ENST00000471439 EGFRP00533 1210 aa7.21□□□□□ -1.26
VPS13A-210ENST00000471439 CD163Q86VB7 1156 aa7.21□□□□□ -1.26
VPS13A-210ENST00000471439 TRPM4Q8TD43 1214 aa7.21□□□□□ -1.26
VPS13A-210ENST00000471439 HELQQ8TDG4 1101 aa7.21□□□□□ -1.26
VPS13A-210ENST00000471439 ANO2Q9NQ90 1003 aa7.21□□□□□ -1.26
VPS13A-210ENST00000471439 PRDM6Q9NQX0 595 aa7.21□□□□□ -1.26
VPS13A-210ENST00000471439 C1QTNF9BB2RNN3 333 aa7.2□□□□□ -1.26
VPS13A-210ENST00000471439 J3QW42 95 aa7.2□□□□□ -1.26
VPS13A-210ENST00000471439 LILRB5O75023 590 aa7.2□□□□□ -1.26
VPS13A-210ENST00000471439 AFF1P51825 1210 aaKnown RBP7.2□□□□□ -1.26
VPS13A-210ENST00000471439 GPLD1P80108 840 aa7.2□□□□□ -1.26
VPS13A-210ENST00000471439 ZNF211Q13398 564 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-210ENST00000471439 COL13A1Q5TAT6 717 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-210ENST00000471439 EFCC1Q9HA90 598 aa7.2□□□□□ -1.26
VPS13A-210ENST00000471439 NOP53Q9NZM5 478 aaKnown RBP7.2□□□□□ -1.26
VPS13A-210ENST00000471439 MAGI3Q5TCQ9 1506 aa7.19□□□□□ -1.26
VPS13A-210ENST00000471439 TOM1O60784 492 aa7.19□□□□□ -1.26
VPS13A-210ENST00000471439 EIF2AK2P19525 551 aaKnown RBP7.19□□□□□ -1.26
VPS13A-210ENST00000471439 GRIK5Q16478 980 aa7.19□□□□□ -1.26
VPS13A-210ENST00000471439 NUDT16Q96DE0 195 aaKnown RBP7.19□□□□□ -1.26
VPS13A-210ENST00000471439 TLR7Q9NYK1 1049 aaKnown RBP7.19□□□□□ -1.26
VPS13A-210ENST00000471439 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.19□□□□□ -1.26
VPS13A-210ENST00000471439 SETBP1Q9Y6X0 1596 aa7.19□□□□□ -1.26
VPS13A-210ENST00000471439 ARAP3Q8WWN8 1544 aa7.18□□□□□ -1.26
VPS13A-210ENST00000471439 TTC37Q6PGP7 1564 aa7.18□□□□□ -1.26
VPS13A-210ENST00000471439 CYP2E1P05181 493 aaPredicted RBP7.18□□□□□ -1.26
VPS13A-210ENST00000471439 SUZ12Q15022 739 aaKnown RBP7.18□□□□□ -1.26
VPS13A-210ENST00000471439 GRIK4Q16099 956 aa7.18□□□□□ -1.26
VPS13A-210ENST00000471439 ABTB2Q8N961 1025 aa7.18□□□□□ -1.26
VPS13A-210ENST00000471439 EDEM1Q92611 657 aa7.18□□□□□ -1.26
VPS13A-210ENST00000471439 TMEM63CQ9P1W3 806 aa7.18□□□□□ -1.26
VPS13A-210ENST00000471439 SETD1BQ9UPS6 1966 aaKnown RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 135 ms