RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 PIK3CDO00329 1044 aa7.84□□□□□ -1.15
SYNE1-219ENST00000469439 BCRP11274 1271 aa7.84□□□□□ -1.15
SYNE1-219ENST00000469439 MSX1P28360 303 aa7.84□□□□□ -1.15
SYNE1-219ENST00000469439 IRS1P35568 1242 aa7.84□□□□□ -1.15
SYNE1-219ENST00000469439 PSME1Q06323 249 aa7.84□□□□□ -1.15
SYNE1-219ENST00000469439 NGDNQ8NEJ9 315 aaKnown RBP7.84□□□□□ -1.15
SYNE1-219ENST00000469439 RUBCNLQ9H714 662 aa7.84□□□□□ -1.15
SYNE1-219ENST00000469439 NSFL1CQ9UNZ2 370 aaKnown RBP7.84□□□□□ -1.15
SYNE1-219ENST00000469439 ANKRD36BQ8N2N9 1353 aa7.84□□□□□ -1.16
SYNE1-219ENST00000469439 LOC100996750A0A140TA64 210 aa7.83□□□□□ -1.16
SYNE1-219ENST00000469439 CSB-PGBD3P0DP91 1061 aa7.83□□□□□ -1.16
SYNE1-219ENST00000469439 MAP2K3P46734 347 aa7.83□□□□□ -1.16
SYNE1-219ENST00000469439 KANK3Q6NY19 840 aa7.83□□□□□ -1.16
SYNE1-219ENST00000469439 PGBD3Q8N328 593 aa7.83□□□□□ -1.16
SYNE1-219ENST00000469439 KRTAP4-6Q9BYQ5 205 aa7.83□□□□□ -1.16
SYNE1-219ENST00000469439 CRISPLD1Q9H336 500 aa7.83□□□□□ -1.16
SYNE1-219ENST00000469439 ALG2Q9H553 416 aa7.83□□□□□ -1.16
SYNE1-219ENST00000469439 PANK3Q9H999 370 aa7.83□□□□□ -1.16
SYNE1-219ENST00000469439 LRRC4BQ9NT99 713 aa7.83□□□□□ -1.16
SYNE1-219ENST00000469439 ADGRL3Q9HAR2 1447 aa7.83□□□□□ -1.16
SYNE1-219ENST00000469439 DISP3Q9P2K9 1392 aa7.83□□□□□ -1.16
SYNE1-219ENST00000469439 NRXN3Q9Y4C0 1643 aa7.82□□□□□ -1.16
SYNE1-219ENST00000469439 TMEM229AB2RXF0 380 aa7.82□□□□□ -1.16
SYNE1-219ENST00000469439 CCER2I3L3R5 266 aa7.82□□□□□ -1.16
SYNE1-219ENST00000469439 PLA2G4AP47712 749 aa7.82□□□□□ -1.16
SYNE1-219ENST00000469439 ZNF295-AS1Q8N0V1 137 aa7.82□□□□□ -1.16
SYNE1-219ENST00000469439 POM121Q96HA1 1249 aa7.82□□□□□ -1.16
SYNE1-219ENST00000469439 PHF24Q9UPV7 400 aa7.82□□□□□ -1.16
SYNE1-219ENST00000469439 DNMT3AQ9Y6K1 912 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-219ENST00000469439 ATP7BP35670 1465 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 TTC21AQ8NDW8 1320 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 NWD1Q149M9 1564 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 PTPRUQ92729 1446 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 TOM1O60784 492 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 ATP4AP20648 1035 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 SMTNP53814 917 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 SUZ12Q15022 739 aaKnown RBP7.81□□□□□ -1.16
SYNE1-219ENST00000469439 MTFR1Q15390 333 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 EFHC2Q5JST6 749 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 TBC1D9Q6ZT07 1266 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 NDFIP2Q9NV92 336 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 CABP1Q9NZU7 370 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 ATXN7L1Q9ULK2 861 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-219ENST00000469439 ASXL1Q8IXJ9 1541 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 TMEM94Q12767 1356 aa7.81□□□□□ -1.16
SYNE1-219ENST00000469439 ADGRB2O60241 1585 aa7.8□□□□□ -1.16
SYNE1-219ENST00000469439 TULP4Q9NRJ4 1543 aa7.8□□□□□ -1.16
SYNE1-219ENST00000469439 OIP5O43482 229 aa7.8□□□□□ -1.16
SYNE1-219ENST00000469439 EML3Q32P44 896 aa7.8□□□□□ -1.16
SYNE1-219ENST00000469439 NFATC2IPQ8NCF5 419 aa7.8□□□□□ -1.16
SYNE1-219ENST00000469439 CFAP53Q96M91 514 aa7.8□□□□□ -1.16
SYNE1-219ENST00000469439 SLC4A9Q96Q91 983 aa7.8□□□□□ -1.16
SYNE1-219ENST00000469439 OXCT2Q9BYC2 517 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-219ENST00000469439 NIFKQ9BYG3 293 aaKnown RBP7.8□□□□□ -1.16
SYNE1-219ENST00000469439 SLC12A5Q9H2X9 1139 aa7.8□□□□□ -1.16
SYNE1-219ENST00000469439 IQSEC3Q9UPP2 1182 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-219ENST00000469439 PCDHGA11Q9Y5H2 935 aa7.8□□□□□ -1.16
SYNE1-219ENST00000469439 ARHGEF28Q8N1W1 1705 aaKnown RBP7.8□□□□□ -1.16
SYNE1-219ENST00000469439 QRICH2Q9H0J4 1663 aa7.79□□□□□ -1.16
SYNE1-219ENST00000469439 NPHP3Q7Z494 1330 aa7.79□□□□□ -1.16
SYNE1-219ENST00000469439 PPIP5K1Q6PFW1 1433 aa7.79□□□□□ -1.16
SYNE1-219ENST00000469439 SETD1AO15047 1707 aaKnown RBP7.79□□□□□ -1.16
SYNE1-219ENST00000469439 XRN1Q8IZH2 1706 aaKnown RBP7.79□□□□□ -1.16
SYNE1-219ENST00000469439 SKIP12755 728 aa7.79□□□□□ -1.16
SYNE1-219ENST00000469439 MORC1Q86VD1 984 aa7.79□□□□□ -1.16
SYNE1-219ENST00000469439 WWC1Q8IX03 1113 aa7.79□□□□□ -1.16
SYNE1-219ENST00000469439 NEDD1Q8NHV4 660 aa7.79□□□□□ -1.16
SYNE1-219ENST00000469439 C1orf216Q8TAB5 229 aa7.79□□□□□ -1.16
SYNE1-219ENST00000469439 ABHD17AQ96GS6 310 aa7.79□□□□□ -1.16
SYNE1-219ENST00000469439 COG3Q96JB2 828 aa7.79□□□□□ -1.16
SYNE1-219ENST00000469439 PNNQ9H307 717 aaKnown RBP7.79□□□□□ -1.16
SYNE1-219ENST00000469439 DNAAF2Q9NVR5 837 aaKnown RBP7.79□□□□□ -1.16
SYNE1-219ENST00000469439 SERTAD1Q9UHV2 236 aa7.79□□□□□ -1.16
SYNE1-219ENST00000469439 CNTNAP5Q8WYK1 1306 aa7.78□□□□□ -1.16
SYNE1-219ENST00000469439 EDC4Q6P2E9 1401 aaKnown RBP7.78□□□□□ -1.16
SYNE1-219ENST00000469439 CHD2O14647 1828 aaKnown RBP7.78□□□□□ -1.16
SYNE1-219ENST00000469439 BNIP3LO60238 219 aa7.78□□□□□ -1.16
SYNE1-219ENST00000469439 LZTS3O60299 673 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-219ENST00000469439 NLRP13Q86W25 1043 aa7.78□□□□□ -1.16
SYNE1-219ENST00000469439 KLRG1Q96E93 195 aa7.78□□□□□ -1.16
SYNE1-219ENST00000469439 PRKRIP1Q9H875 184 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-219ENST00000469439 SLAIN2Q9P270 581 aa7.78□□□□□ -1.16
SYNE1-219ENST00000469439 USP3Q9Y6I4 520 aa7.78□□□□□ -1.16
SYNE1-219ENST00000469439 PLEKHH1Q9ULM0 1364 aa7.78□□□□□ -1.16
SYNE1-219ENST00000469439 CDC42BPGQ6DT37 1551 aa7.78□□□□□ -1.16
SYNE1-219ENST00000469439 MYBBP1AQ9BQG0 1328 aaKnown RBP7.78□□□□□ -1.16
SYNE1-219ENST00000469439 IQSEC2Q5JU85 1478 aa7.77□□□□□ -1.17
SYNE1-219ENST00000469439 POLR3AO14802 1390 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-219ENST00000469439 A6NJY4 79 aa7.77□□□□□ -1.17
SYNE1-219ENST00000469439 PHF20L1A8MW92 1017 aa7.77□□□□□ -1.17
SYNE1-219ENST00000469439 FGFR3P22607 806 aa7.77□□□□□ -1.17
SYNE1-219ENST00000469439 GTF2IP78347 998 aa7.77□□□□□ -1.17
SYNE1-219ENST00000469439 FLIIQ13045 1269 aa7.77□□□□□ -1.17
SYNE1-219ENST00000469439 NCOA4Q13772 614 aa7.77□□□□□ -1.17
SYNE1-219ENST00000469439 KCNH5Q8NCM2 988 aa7.77□□□□□ -1.17
SYNE1-219ENST00000469439 NOD1Q9Y239 953 aa7.77□□□□□ -1.17
SYNE1-219ENST00000469439 NUDCQ9Y266 331 aa7.77□□□□□ -1.17
SYNE1-219ENST00000469439 ACEP12821 1306 aa7.77□□□□□ -1.17
SYNE1-219ENST00000469439 ZNF335Q9H4Z2 1342 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-219ENST00000469439 SHISA8B8ZZ34 492 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms