RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ANO10Q9NW15 660 aa13.67□□□□□ -0.22
CPSF3-202ENST00000460593 C9orf78Q9NZ63 289 aaPredicted RBP13.67□□□□□ -0.22
CPSF3-202ENST00000460593 A0A0G2JLW4 131 aa13.67□□□□□ -0.22
CPSF3-202ENST00000460593 SASH1O94885 1247 aa13.67□□□□□ -0.22
CPSF3-202ENST00000460593 ZRANB2O95218 330 aaKnown RBP eCLIP13.67□□□□□ -0.22
CPSF3-202ENST00000460593 GNL2Q13823 731 aaKnown RBP13.67□□□□□ -0.22
CPSF3-202ENST00000460593 MNS1Q8NEH6 495 aa13.67□□□□□ -0.22
CPSF3-202ENST00000460593 ZSWIM4Q9H7M6 989 aa13.66□□□□□ -0.22
CPSF3-202ENST00000460593 COL15A1P39059 1388 aa13.66□□□□□ -0.22
CPSF3-202ENST00000460593 NPM1P06748 294 aaKnown RBP eCLIP13.66□□□□□ -0.22
CPSF3-202ENST00000460593 RSPH14Q9UHP6 348 aa13.66□□□□□ -0.22
CPSF3-202ENST00000460593 CFAP45Q9UL16 551 aa13.66□□□□□ -0.22
CPSF3-202ENST00000460593 APOBRQ0VD83 1088 aa13.65□□□□□ -0.22
CPSF3-202ENST00000460593 ANKRD1Q15327 319 aa13.65□□□□□ -0.22
CPSF3-202ENST00000460593 GPATCH3Q96I76 525 aa13.65□□□□□ -0.22
CPSF3-202ENST00000460593 LGR6Q9HBX8 967 aa13.65□□□□□ -0.22
CPSF3-202ENST00000460593 NDUFA8P51970 172 aa13.65□□□□□ -0.22
CPSF3-202ENST00000460593 PROSER3Q2NL68 480 aa13.65□□□□□ -0.22
CPSF3-202ENST00000460593 TEX35Q5T0J7 233 aa13.65□□□□□ -0.22
CPSF3-202ENST00000460593 RNF20Q5VTR2 975 aa13.65□□□□□ -0.22
CPSF3-202ENST00000460593 RAB11FIP4Q86YS3 637 aa13.65□□□□□ -0.22
CPSF3-202ENST00000460593 ENGASEQ8NFI3 743 aa13.65□□□□□ -0.22
CPSF3-202ENST00000460593 DPF2Q92785 391 aa13.65□□□□□ -0.22
CPSF3-202ENST00000460593 GJB4Q9NTQ9 266 aa13.65□□□□□ -0.22
CPSF3-202ENST00000460593 USP42Q9H9J4 1324 aaKnown RBP13.65□□□□□ -0.22
CPSF3-202ENST00000460593 EVCP57679 992 aa13.65□□□□□ -0.23
CPSF3-202ENST00000460593 CCDC191Q8NCU4 936 aa13.65□□□□□ -0.23
CPSF3-202ENST00000460593 CHMP4CQ96CF2 233 aa13.65□□□□□ -0.23
CPSF3-202ENST00000460593 UTP14AQ9BVJ6 771 aaKnown RBP13.65□□□□□ -0.23
CPSF3-202ENST00000460593 PRAMEF22A3QJZ6 481 aa13.64□□□□□ -0.23
CPSF3-202ENST00000460593 CTDNEP1O95476 244 aa13.64□□□□□ -0.23
CPSF3-202ENST00000460593 TNNT3P45378 269 aaPredicted RBP13.64□□□□□ -0.23
CPSF3-202ENST00000460593 HSP90AB4PQ58FF6 505 aa13.64□□□□□ -0.23
CPSF3-202ENST00000460593 KLHL34Q8N239 644 aa13.64□□□□□ -0.23
CPSF3-202ENST00000460593 NEK1Q96PY6 1258 aa13.64□□□□□ -0.23
CPSF3-202ENST00000460593 TAF5LO75529 589 aa13.64□□□□□ -0.23
CPSF3-202ENST00000460593 TBC1D8O95759 1140 aa13.64□□□□□ -0.23
CPSF3-202ENST00000460593 GSDMDP57764 484 aa13.64□□□□□ -0.23
CPSF3-202ENST00000460593 FAM160A1Q05DH4 1040 aa13.64□□□□□ -0.23
CPSF3-202ENST00000460593 ILDR1Q86SU0 546 aaPredicted RBP13.64□□□□□ -0.23
CPSF3-202ENST00000460593 OSBPL5Q9H0X9 879 aaPredicted RBP13.64□□□□□ -0.23
CPSF3-202ENST00000460593 PCDHA7Q9UN72 937 aa13.64□□□□□ -0.23
CPSF3-202ENST00000460593 NRKQ7Z2Y5 1582 aa13.63□□□□□ -0.23
CPSF3-202ENST00000460593 PTPDC1A2A3K4 754 aa13.63□□□□□ -0.23
CPSF3-202ENST00000460593 POLR3DP05423 398 aaPredicted RBP13.63□□□□□ -0.23
CPSF3-202ENST00000460593 RCOR1Q9UKL0 485 aa13.63□□□□□ -0.23
CPSF3-202ENST00000460593 MAP3K2Q9Y2U5 619 aa13.63□□□□□ -0.23
CPSF3-202ENST00000460593 ANKRD65E5RJM6 399 aa13.63□□□□□ -0.23
CPSF3-202ENST00000460593 ETF1P62495 437 aaKnown RBP13.63□□□□□ -0.23
CPSF3-202ENST00000460593 AIMP1Q12904 312 aaKnown RBP13.63□□□□□ -0.23
CPSF3-202ENST00000460593 STOX1Q6ZVD7 989 aa13.63□□□□□ -0.23
CPSF3-202ENST00000460593 FAM208AQ9UK61 1670 aaKnown RBP13.63□□□□□ -0.23
CPSF3-202ENST00000460593 TADA3O75528 432 aa13.63□□□□□ -0.23
CPSF3-202ENST00000460593 CAVIN2O95810 425 aa13.63□□□□□ -0.23
CPSF3-202ENST00000460593 CYP21A2P08686 494 aa13.63□□□□□ -0.23
CPSF3-202ENST00000460593 PDIA4P13667 645 aaKnown RBP13.63□□□□□ -0.23
CPSF3-202ENST00000460593 LMAN1P49257 510 aa13.63□□□□□ -0.23
CPSF3-202ENST00000460593 TEFQ10587 303 aa13.63□□□□□ -0.23
CPSF3-202ENST00000460593 SMC1AQ14683 1233 aaKnown RBP13.63□□□□□ -0.23
CPSF3-202ENST00000460593 TRIM65Q6PJ69 517 aa13.63□□□□□ -0.23
CPSF3-202ENST00000460593 SUCLG2Q96I99 432 aa13.63□□□□□ -0.23
CPSF3-202ENST00000460593 ZSCAN26Q16670 478 aa13.62□□□□□ -0.23
CPSF3-202ENST00000460593 NSUN7Q8NE18 718 aaKnown RBP13.62□□□□□ -0.23
CPSF3-202ENST00000460593 OVOS2A0A0J9YW53 1432 aa13.62□□□□□ -0.23
CPSF3-202ENST00000460593 OVOS2Q6IE36 1432 aa13.62□□□□□ -0.23
CPSF3-202ENST00000460593 TMEM232C9JQI7 657 aa13.62□□□□□ -0.23
CPSF3-202ENST00000460593 ZRSR1Q15695 479 aaKnown RBP13.62□□□□□ -0.23
CPSF3-202ENST00000460593 WDR24Q96S15 920 aa13.62□□□□□ -0.23
CPSF3-202ENST00000460593 BICC1Q9H694 974 aaKnown RBP13.62□□□□□ -0.23
CPSF3-202ENST00000460593 GPHNQ9NQX3 736 aaPredicted RBP13.62□□□□□ -0.23
CPSF3-202ENST00000460593 ARGLU1Q9NWB6 273 aaPredicted RBP13.62□□□□□ -0.23
CPSF3-202ENST00000460593 KIF2AO00139 706 aaPredicted RBP13.61□□□□□ -0.23
CPSF3-202ENST00000460593 CTAGE5O15320 804 aa13.61□□□□□ -0.23
CPSF3-202ENST00000460593 ZSCAN16Q9H4T2 348 aaPredicted RBP13.61□□□□□ -0.23
CPSF3-202ENST00000460593 CLIC4Q9Y696 253 aa13.61□□□□□ -0.23
CPSF3-202ENST00000460593 C3P01024 1663 aa13.61□□□□□ -0.23
CPSF3-202ENST00000460593 IGSF1Q8N6C5 1336 aa13.61□□□□□ -0.23
CPSF3-202ENST00000460593 H3BQF6 201 aa13.61□□□□□ -0.23
CPSF3-202ENST00000460593 TPM4P67936 248 aa13.61□□□□□ -0.23
CPSF3-202ENST00000460593 SLC20A2Q08357 652 aa13.61□□□□□ -0.23
CPSF3-202ENST00000460593 G3BP1Q13283 466 aaKnown RBP eCLIP13.61□□□□□ -0.23
CPSF3-202ENST00000460593 FMR1NBQ8N0W7 255 aaPredicted RBP13.61□□□□□ -0.23
CPSF3-202ENST00000460593 PARP3Q9Y6F1 533 aa13.61□□□□□ -0.23
CPSF3-202ENST00000460593 MYO1CO00159 1063 aa13.61□□□□□ -0.23
CPSF3-202ENST00000460593 GIGYF1O75420 1035 aaPredicted RBP13.61□□□□□ -0.23
CPSF3-202ENST00000460593 CC2D1AQ6P1N0 951 aaPredicted RBP13.61□□□□□ -0.23
CPSF3-202ENST00000460593 FANCCQ00597 558 aa13.6□□□□□ -0.23
CPSF3-202ENST00000460593 FOXR1Q6PIV2 292 aa13.6□□□□□ -0.23
CPSF3-202ENST00000460593 REXO1L1PQ8IX06 675 aa13.6□□□□□ -0.23
CPSF3-202ENST00000460593 CCDC150Q8NCX0 1101 aa13.6□□□□□ -0.23
CPSF3-202ENST00000460593 KAZALD1Q96I82 304 aa13.6□□□□□ -0.23
CPSF3-202ENST00000460593 NAT10Q9H0A0 1025 aaKnown RBP13.6□□□□□ -0.23
CPSF3-202ENST00000460593 MED23Q9ULK4 1368 aa13.6□□□□□ -0.23
CPSF3-202ENST00000460593 DIP2CQ9Y2E4 1556 aa13.6□□□□□ -0.23
CPSF3-202ENST00000460593 PSDA5PKW4 1024 aaPredicted RBP13.6□□□□□ -0.23
CPSF3-202ENST00000460593 SF3A1Q15459 793 aaKnown RBP13.6□□□□□ -0.23
CPSF3-202ENST00000460593 DDX46Q7L014 1031 aaKnown RBP13.6□□□□□ -0.23
CPSF3-202ENST00000460593 MRPS27Q92552 414 aaKnown RBP13.6□□□□□ -0.23
CPSF3-202ENST00000460593 KIAA1468Q9P260 1216 aa13.6□□□□□ -0.23
CPSF3-202ENST00000460593 ADGRL3Q9HAR2 1447 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms