RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 ITGA6P23229 1130 aa16.9■□□□□ 0.3
LIMD1-202ENST00000440097 LDHAL6AQ6ZMR3 332 aa16.9■□□□□ 0.3
LIMD1-202ENST00000440097 ZNF589Q86UQ0 364 aaPredicted RBP16.9■□□□□ 0.3
LIMD1-202ENST00000440097 MAP7D2Q96T17 732 aa16.9■□□□□ 0.3
LIMD1-202ENST00000440097 CYP2E1P05181 493 aaPredicted RBP16.89■□□□□ 0.3
LIMD1-202ENST00000440097 IFIT1P09914 478 aaKnown RBP16.89■□□□□ 0.3
LIMD1-202ENST00000440097 GREM2Q9H772 168 aa16.89■□□□□ 0.3
LIMD1-202ENST00000440097 CNNM1Q9NRU3 951 aa16.89■□□□□ 0.3
LIMD1-202ENST00000440097 RBM27Q9P2N5 1060 aaKnown RBP16.89■□□□□ 0.3
LIMD1-202ENST00000440097 PALLDQ8WX93 1383 aa16.89■□□□□ 0.29
LIMD1-202ENST00000440097 KCNQ4P56696 695 aa16.89■□□□□ 0.29
LIMD1-202ENST00000440097 FKBP4Q02790 459 aaKnown RBP eCLIP16.89■□□□□ 0.29
LIMD1-202ENST00000440097 ADCK5Q3MIX3 580 aa16.89■□□□□ 0.29
LIMD1-202ENST00000440097 PAG1Q9NWQ8 432 aa16.89■□□□□ 0.29
LIMD1-202ENST00000440097 PRDM4Q9UKN5 801 aa16.89■□□□□ 0.29
LIMD1-202ENST00000440097 ZDHHC9Q9Y397 364 aa16.89■□□□□ 0.29
LIMD1-202ENST00000440097 AK2P54819 239 aa16.89■□□□□ 0.29
LIMD1-202ENST00000440097 CTSWP56202 376 aa16.89■□□□□ 0.29
LIMD1-202ENST00000440097 METTL24Q5JXM2 366 aa16.89■□□□□ 0.29
LIMD1-202ENST00000440097 RNF20Q5VTR2 975 aa16.89■□□□□ 0.29
LIMD1-202ENST00000440097 CREB3L3Q68CJ9 461 aa16.89■□□□□ 0.29
LIMD1-202ENST00000440097 GPR108Q9NPR9 543 aa16.89■□□□□ 0.29
LIMD1-202ENST00000440097 AKAP2Q9Y2D5 859 aa16.89■□□□□ 0.29
LIMD1-202ENST00000440097 NRAPQ86VF7 1730 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 WNK3Q9BYP7 1800 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 ANKRD18BA2A2Z9 1011 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 ERVV-1B6SEH8 477 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 DTNBO60941 627 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 CCDC158Q5M9N0 1113 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 TTLL11Q8NHH1 800 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 MAP4K1Q92918 833 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 CYP46A1Q9Y6A2 500 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 SLIT2O94813 1529 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 PRPF40AO75400 957 aaKnown RBP16.88■□□□□ 0.29
LIMD1-202ENST00000440097 ITPK1Q13572 414 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 COL9A3Q14050 684 aaPredicted RBP16.88■□□□□ 0.29
LIMD1-202ENST00000440097 TTC39AQ5SRH9 613 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 INTS5Q6P9B9 1019 aaKnown RBP16.88■□□□□ 0.29
LIMD1-202ENST00000440097 CCDC129Q6ZRS4 1044 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 SEC62Q99442 399 aaKnown RBP16.88■□□□□ 0.29
LIMD1-202ENST00000440097 ZKSCAN5Q9Y2L8 839 aa16.88■□□□□ 0.29
LIMD1-202ENST00000440097 CSF1RP07333 972 aa16.87■□□□□ 0.29
LIMD1-202ENST00000440097 NECTIN1Q15223 517 aa16.87■□□□□ 0.29
LIMD1-202ENST00000440097 KBTBD3Q8NAB2 608 aa16.87■□□□□ 0.29
LIMD1-202ENST00000440097 GPT2Q8TD30 523 aa16.87■□□□□ 0.29
LIMD1-202ENST00000440097 PLA2G12BQ9BX93 195 aa16.87■□□□□ 0.29
LIMD1-202ENST00000440097 SNRKQ9NRH2 765 aa16.87■□□□□ 0.29
LIMD1-202ENST00000440097 PDRG1Q9NUG6 133 aa16.87■□□□□ 0.29
LIMD1-202ENST00000440097 UBN2Q6ZU65 1347 aa16.87■□□□□ 0.29
LIMD1-202ENST00000440097 EIF5P55010 431 aaKnown RBP16.87■□□□□ 0.29
LIMD1-202ENST00000440097 CDHR2Q9BYE9 1310 aa16.86■□□□□ 0.29
LIMD1-202ENST00000440097 ZNF609O15014 1411 aa16.86■□□□□ 0.29
LIMD1-202ENST00000440097 PDE8AO60658 829 aa16.86■□□□□ 0.29
LIMD1-202ENST00000440097 HCLS1P14317 486 aaPredicted RBP16.86■□□□□ 0.29
LIMD1-202ENST00000440097 ADORA1P30542 326 aa16.86■□□□□ 0.29
LIMD1-202ENST00000440097 SMARCC1Q92922 1105 aaPredicted RBP16.86■□□□□ 0.29
LIMD1-202ENST00000440097 IL17RAQ96F46 866 aa16.86■□□□□ 0.29
LIMD1-202ENST00000440097 XAGE2Q96GT9 111 aa16.86■□□□□ 0.29
LIMD1-202ENST00000440097 ARID3AQ99856 593 aa16.86■□□□□ 0.29
LIMD1-202ENST00000440097 SLC27A2O14975 620 aa16.85■□□□□ 0.29
LIMD1-202ENST00000440097 SLFNL1Q499Z3 407 aa16.85■□□□□ 0.29
LIMD1-202ENST00000440097 LIMCH1Q9UPQ0 1083 aa16.85■□□□□ 0.29
LIMD1-202ENST00000440097 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.85■□□□□ 0.29
LIMD1-202ENST00000440097 CUL4AQ13619 759 aa16.85■□□□□ 0.29
LIMD1-202ENST00000440097 MCMDC2Q4G0Z9 681 aa16.85■□□□□ 0.29
LIMD1-202ENST00000440097 USP21Q9UK80 565 aa16.85■□□□□ 0.29
LIMD1-202ENST00000440097 JCADQ9P266 1359 aa16.85■□□□□ 0.29
LIMD1-202ENST00000440097 MED23Q9ULK4 1368 aa16.85■□□□□ 0.29
LIMD1-202ENST00000440097 FBXO3Q9UK99 471 aa16.84■□□□□ 0.29
LIMD1-202ENST00000440097 NIP7Q9Y221 180 aaKnown RBP eCLIP16.84■□□□□ 0.29
LIMD1-202ENST00000440097 TAF5LO75529 589 aa16.84■□□□□ 0.29
LIMD1-202ENST00000440097 PSMA5P28066 241 aa16.84■□□□□ 0.29
LIMD1-202ENST00000440097 ATP2B3Q16720 1220 aa16.84■□□□□ 0.29
LIMD1-202ENST00000440097 CSPP1Q1MSJ5 1256 aa16.84■□□□□ 0.29
LIMD1-202ENST00000440097 SUSD4Q5VX71 490 aa16.84■□□□□ 0.29
LIMD1-202ENST00000440097 INTS4Q96HW7 963 aaKnown RBP16.84■□□□□ 0.29
LIMD1-202ENST00000440097 TTC14Q96N46 770 aa16.84■□□□□ 0.29
LIMD1-202ENST00000440097 SH3TC1Q8TE82 1336 aa16.84■□□□□ 0.29
LIMD1-202ENST00000440097 VPS72Q15906 364 aa16.83■□□□□ 0.29
LIMD1-202ENST00000440097 RUFY3Q7L099 469 aa16.83■□□□□ 0.29
LIMD1-202ENST00000440097 ZNF34Q8IZ26 560 aa16.83■□□□□ 0.29
LIMD1-202ENST00000440097 TCEANC2Q96MN5 208 aa16.83■□□□□ 0.29
LIMD1-202ENST00000440097 FOXD4L6Q3SYB3 417 aaPredicted RBP16.83■□□□□ 0.28
LIMD1-202ENST00000440097 FOXD4L3Q6VB84 417 aaPredicted RBP16.83■□□□□ 0.28
LIMD1-202ENST00000440097 TMEM63CQ9P1W3 806 aa16.83■□□□□ 0.28
LIMD1-202ENST00000440097 TAF6LQ9Y6J9 622 aa16.83■□□□□ 0.28
LIMD1-202ENST00000440097 NWD2Q9ULI1 1742 aa16.83■□□□□ 0.28
LIMD1-202ENST00000440097 SYCE3A1L190 88 aa16.83■□□□□ 0.28
LIMD1-202ENST00000440097 DYNC1I1O14576 645 aa16.83■□□□□ 0.28
LIMD1-202ENST00000440097 BLOC1S2Q6QNY1 142 aa16.83■□□□□ 0.28
LIMD1-202ENST00000440097 LRSAM1Q6UWE0 723 aa16.83■□□□□ 0.28
LIMD1-202ENST00000440097 UTP14AQ9BVJ6 771 aaKnown RBP16.83■□□□□ 0.28
LIMD1-202ENST00000440097 ZSWIM6Q9HCJ5 1215 aa16.83■□□□□ 0.28
LIMD1-202ENST00000440097 VPS53Q5VIR6 699 aa16.82■□□□□ 0.28
LIMD1-202ENST00000440097 PTF1AQ7RTS3 328 aa16.82■□□□□ 0.28
LIMD1-202ENST00000440097 NUP98P52948 1817 aa16.82■□□□□ 0.28
LIMD1-202ENST00000440097 MCM5P33992 734 aa16.82■□□□□ 0.28
LIMD1-202ENST00000440097 SMIM5Q71RC9 77 aa16.82■□□□□ 0.28
LIMD1-202ENST00000440097 HELBQ8NG08 1087 aaPredicted RBP16.82■□□□□ 0.28
LIMD1-202ENST00000440097 TM6SF1Q9BZW5 370 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 212.5 ms