RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 CTDNEP1O95476 244 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 HOXB7P09629 217 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 SPDYE6P0CI01 402 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 GUCY1B3Q02153 619 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 TYRO3Q06418 890 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 GCKRQ14397 625 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 CHRNA2Q15822 529 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 SPDYE2Q495Y8 402 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 HSP90AB3PQ58FF7 597 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 C1orf141Q5JVX7 400 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 RAB11FIP4Q86YS3 637 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 LEO1Q8WVC0 666 aaPredicted RBP8.54□□□□□ -1.04
COL28A1-202ENST00000430711 BRF1Q92994 677 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 GOLPH3LQ9H4A5 285 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 CBX8Q9HC52 389 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 UTYO14607 1347 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 MRC1P22897 1456 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 MCM5P33992 734 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 ZNF790Q6PG37 636 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 BLOC1S2Q6QNY1 142 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 C11orf57Q6ZUT1 292 aaPredicted RBP8.53□□□□□ -1.04
COL28A1-202ENST00000430711 RIC3Q7Z5B4 369 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 MYRIPQ8NFW9 859 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 KIAA1524Q8TCG1 905 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 FBXW7Q969H0 707 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 TM6SF1Q9BZW5 370 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 DNAJC25Q9H1X3 360 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 DDX21Q9NR30 783 aaKnown RBP eCLIP8.53□□□□□ -1.04
COL28A1-202ENST00000430711 SPTLC3Q9NUV7 552 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 SCN11AQ9UI33 1791 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 ARFGEF2Q9Y6D5 1785 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 SLIT3O75094 1523 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 TMEM94Q12767 1356 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 PALLDQ8WX93 1383 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 NUTM2BA6NNL0 878 aaPredicted RBP8.53□□□□□ -1.04
COL28A1-202ENST00000430711 NUTM2EB1AL46 878 aaPredicted RBP8.53□□□□□ -1.04
COL28A1-202ENST00000430711 RIOK3O14730 519 aaKnown RBP8.53□□□□□ -1.04
COL28A1-202ENST00000430711 TERF1P54274 439 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 SCRN1Q12765 414 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 RESTQ13127 1097 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 G3BP1Q13283 466 aaKnown RBP eCLIP8.53□□□□□ -1.04
COL28A1-202ENST00000430711 Q6ZUG5 572 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 NUTM2AQ8IVF1 878 aaPredicted RBP8.53□□□□□ -1.04
COL28A1-202ENST00000430711 ZNF594Q96JF6 807 aaPredicted RBP8.53□□□□□ -1.04
COL28A1-202ENST00000430711 PRDM4Q9UKN5 801 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 DENND2AQ9ULE3 1009 aa8.53□□□□□ -1.04
COL28A1-202ENST00000430711 ADGRL3Q9HAR2 1447 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 ERBB3P21860 1342 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 USP27XA6NNY8 438 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 EPB41L2O43491 1005 aaKnown RBP8.52□□□□□ -1.05
COL28A1-202ENST00000430711 PHF14O94880 888 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 YY1P25490 414 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 ADD1P35611 737 aaKnown RBP8.52□□□□□ -1.05
COL28A1-202ENST00000430711 TTLL5Q6EMB2 1281 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 OTUD7BQ6GQQ9 843 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 BCL2L12Q9HB09 334 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 SNRKQ9NRH2 765 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 MYH15Q9Y2K3 1946 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 AFF2P51816 1311 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 DYNC1I1O14576 645 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 CYP27B1O15528 508 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 APOBRQ0VD83 1088 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 UVSSAQ2YD98 709 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 HSP90AB4PQ58FF6 505 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 TNNI3KQ59H18 835 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 CCDC186Q7Z3E2 898 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 NUP62CLQ9H1M0 184 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 FPGT-TNNI3KV9GXZ4 949 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 NWD2Q9ULI1 1742 aa8.52□□□□□ -1.05
COL28A1-202ENST00000430711 NPHP3Q7Z494 1330 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 NBPF26B4DH59 902 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 ZKSCAN1P17029 563 aaPredicted RBP8.51□□□□□ -1.05
COL28A1-202ENST00000430711 CASP7P55210 303 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 TIMM10P62072 90 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 CCT2P78371 535 aaKnown RBP8.51□□□□□ -1.05
COL28A1-202ENST00000430711 NBPF14Q5TI25 921 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 NBPF10Q6P3W6 841 aaKnown RBP8.51□□□□□ -1.05
COL28A1-202ENST00000430711 NBPF15Q8N660 670 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 FAM184AQ8NB25 1140 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 RUFY2Q8WXA3 655 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 GTF3C6Q969F1 213 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 SPATA32Q96LK8 384 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 SH2B1Q9NRF2 756 aaPredicted RBP8.51□□□□□ -1.05
COL28A1-202ENST00000430711 TJP1Q07157 1748 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 FOXP2O15409 715 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 IGSF3O75054 1194 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 KRT85P78386 507 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 MAP3K11Q16584 847 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 CSPP1Q1MSJ5 1256 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 LRRC24Q50LG9 513 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 TTLL7Q6ZT98 887 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 PIP4P2Q8N4L2 257 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 CACTINQ8WUQ7 758 aaKnown RBP8.51□□□□□ -1.05
COL28A1-202ENST00000430711 SYTL4Q96C24 671 aaPredicted RBP8.51□□□□□ -1.05
COL28A1-202ENST00000430711 CCDC85AQ96PX6 553 aaPredicted RBP8.51□□□□□ -1.05
COL28A1-202ENST00000430711 PUS3Q9BZE2 481 aaKnown RBP8.51□□□□□ -1.05
COL28A1-202ENST00000430711 SLC52A2Q9HAB3 445 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 NLRP2Q9NX02 1062 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 TAOK2Q9UL54 1235 aa8.51□□□□□ -1.05
COL28A1-202ENST00000430711 PHKG2P15735 406 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms