RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PTGS1P23219 599 aa17.56■□□□□ 0.4
PTPRF-206ENST00000429895 IFI16Q16666 785 aaKnown RBP17.56■□□□□ 0.4
PTPRF-206ENST00000429895 SP4Q02446 784 aa17.56■□□□□ 0.4
PTPRF-206ENST00000429895 C16orf71Q8IYS4 520 aaPredicted RBP17.56■□□□□ 0.4
PTPRF-206ENST00000429895 ZGPATQ8N5A5 531 aaKnown RBP17.56■□□□□ 0.4
PTPRF-206ENST00000429895 PODXL2Q9NZ53 605 aa17.56■□□□□ 0.4
PTPRF-206ENST00000429895 SYNJ1O43426 1573 aa17.56■□□□□ 0.4
PTPRF-206ENST00000429895 NOS1P29475 1434 aa17.56■□□□□ 0.4
PTPRF-206ENST00000429895 ASIC1P78348 528 aa17.56■□□□□ 0.4
PTPRF-206ENST00000429895 CEP112Q8N8E3 955 aa17.56■□□□□ 0.4
PTPRF-206ENST00000429895 POTEB2H3BUK9 544 aa17.56■□□□□ 0.4
PTPRF-206ENST00000429895 EEF2P13639 858 aaKnown RBP17.56■□□□□ 0.4
PTPRF-206ENST00000429895 NEMFO60524 1076 aa17.55■□□□□ 0.4
PTPRF-206ENST00000429895 RBM25P49756 843 aaKnown RBP17.55■□□□□ 0.4
PTPRF-206ENST00000429895 UBASH3AP57075 661 aa17.55■□□□□ 0.4
PTPRF-206ENST00000429895 MAGEB6P1A0A0J9YX57 407 aa17.55■□□□□ 0.4
PTPRF-206ENST00000429895 GTF2F1P35269 517 aaKnown RBP eCLIP17.55■□□□□ 0.4
PTPRF-206ENST00000429895 SLC9C2Q5TAH2 1124 aa17.55■□□□□ 0.4
PTPRF-206ENST00000429895 TIAM1Q13009 1591 aa17.55■□□□□ 0.4
PTPRF-206ENST00000429895 Q6ZUG5 572 aa17.55■□□□□ 0.4
PTPRF-206ENST00000429895 DMRT2Q9Y5R5 561 aa17.55■□□□□ 0.4
PTPRF-206ENST00000429895 HSF2BPO75031 334 aa17.54■□□□□ 0.4
PTPRF-206ENST00000429895 LMBR1LQ6UX01 489 aa17.54■□□□□ 0.4
PTPRF-206ENST00000429895 APBB1IPQ7Z5R6 666 aaPredicted RBP17.54■□□□□ 0.4
PTPRF-206ENST00000429895 GSTA5Q7RTV2 222 aa17.54■□□□□ 0.4
PTPRF-206ENST00000429895 USP37Q86T82 979 aa17.54■□□□□ 0.4
PTPRF-206ENST00000429895 MIGA1Q8NAN2 632 aa17.54■□□□□ 0.4
PTPRF-206ENST00000429895 LRRC45Q96CN5 670 aa17.54■□□□□ 0.4
PTPRF-206ENST00000429895 CEP135Q66GS9 1140 aa17.54■□□□□ 0.4
PTPRF-206ENST00000429895 DDX23Q9BUQ8 820 aaKnown RBP17.54■□□□□ 0.4
PTPRF-206ENST00000429895 SPECC1LQ69YQ0 1117 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 CNPY2Q9Y2B0 182 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 UBE2HP62256 183 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 CNNM2Q9H8M5 875 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 TFCP2L1Q9NZI6 479 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 ABCC5O15440 1437 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 HELBQ8NG08 1087 aaPredicted RBP17.53■□□□□ 0.4
PTPRF-206ENST00000429895 BBXQ8WY36 941 aaPredicted RBP17.53■□□□□ 0.4
PTPRF-206ENST00000429895 DHX58Q96C10 678 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 IQCGQ9H095 443 aaKnown RBP17.53■□□□□ 0.4
PTPRF-206ENST00000429895 TOPBP1Q92547 1522 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 CHST3Q7LGC8 479 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 CADPS2Q86UW7 1296 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 MEIS3Q99687 375 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 IMPG2Q9BZV3 1241 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 CCDC50Q8IVM0 306 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 CCDC155Q8N6L0 562 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 C6orf50Q9HD87 102 aa17.53■□□□□ 0.4
PTPRF-206ENST00000429895 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.53■□□□□ 0.4
PTPRF-206ENST00000429895 MXRA7P84157 204 aa17.52■□□□□ 0.4
PTPRF-206ENST00000429895 ZSCAN16Q9H4T2 348 aaPredicted RBP17.52■□□□□ 0.4
PTPRF-206ENST00000429895 RBM8AQ9Y5S9 174 aaKnown RBP17.52■□□□□ 0.4
PTPRF-206ENST00000429895 MSH6P52701 1360 aa17.52■□□□□ 0.4
PTPRF-206ENST00000429895 TNNI2P48788 182 aa17.52■□□□□ 0.4
PTPRF-206ENST00000429895 MAGI1Q96QZ7 1491 aaPredicted RBP17.52■□□□□ 0.4
PTPRF-206ENST00000429895 SPDYE3A6NKU9 549 aa17.52■□□□□ 0.4
PTPRF-206ENST00000429895 CCDC63Q8NA47 563 aa17.52■□□□□ 0.4
PTPRF-206ENST00000429895 CABLES1Q8TDN4 633 aa17.52■□□□□ 0.4
PTPRF-206ENST00000429895 SIRT1Q96EB6 747 aa17.52■□□□□ 0.4
PTPRF-206ENST00000429895 PARP3Q9Y6F1 533 aa17.52■□□□□ 0.4
PTPRF-206ENST00000429895 ZSCAN22P10073 491 aaPredicted RBP17.52■□□□□ 0.39
PTPRF-206ENST00000429895 CKAP4Q07065 602 aaKnown RBP17.52■□□□□ 0.39
PTPRF-206ENST00000429895 MCMDC2Q4G0Z9 681 aa17.52■□□□□ 0.39
PTPRF-206ENST00000429895 PA2G4Q9UQ80 394 aaKnown RBP17.52■□□□□ 0.39
PTPRF-206ENST00000429895 GOLGA6L9A6NEM1 432 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 FAM13AO94988 1023 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 C6orf163Q5TEZ5 329 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 DZIP3Q86Y13 1208 aaKnown RBP17.51■□□□□ 0.39
PTPRF-206ENST00000429895 ZBTB9Q96C00 473 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 HCLS1P14317 486 aaPredicted RBP17.51■□□□□ 0.39
PTPRF-206ENST00000429895 NCBP1Q09161 790 aaKnown RBP17.51■□□□□ 0.39
PTPRF-206ENST00000429895 ANO6Q4KMQ2 910 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 RAB3IL1Q8TBN0 382 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 SREK1Q8WXA9 508 aaKnown RBP17.51■□□□□ 0.39
PTPRF-206ENST00000429895 TMX3Q96JJ7 454 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 PKD2L1Q9P0L9 805 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 IGHDP01880 384 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 DDB1Q16531 1140 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 LRSAM1Q6UWE0 723 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 ZNF830Q96NB3 372 aaPredicted RBP17.51■□□□□ 0.39
PTPRF-206ENST00000429895 PLIN2Q99541 437 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 NDC80O14777 642 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 TAF12Q16514 161 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 RRP36Q96EU6 259 aaKnown RBP17.51■□□□□ 0.39
PTPRF-206ENST00000429895 PLVAPQ9BX97 442 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 MCM9Q9NXL9 1143 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 NSFL1CQ9UNZ2 370 aaKnown RBP17.51■□□□□ 0.39
PTPRF-206ENST00000429895 ZFYP08048 801 aaPredicted RBP17.51■□□□□ 0.39
PTPRF-206ENST00000429895 EHBP1Q8NDI1 1231 aa17.51■□□□□ 0.39
PTPRF-206ENST00000429895 BIN2Q9UBW5 565 aaPredicted RBP17.51■□□□□ 0.39
PTPRF-206ENST00000429895 SDSP20132 328 aa17.5■□□□□ 0.39
PTPRF-206ENST00000429895 TMTC2Q8N394 836 aa17.5■□□□□ 0.39
PTPRF-206ENST00000429895 MAGEB6Q8N7X4 407 aa17.5■□□□□ 0.39
PTPRF-206ENST00000429895 CYLC1P35663 651 aaPredicted RBP17.5■□□□□ 0.39
PTPRF-206ENST00000429895 BMP2KLQ5H9B9 411 aa17.5■□□□□ 0.39
PTPRF-206ENST00000429895 PLCB3Q01970 1234 aa17.5■□□□□ 0.39
PTPRF-206ENST00000429895 SRRTQ9BXP5 876 aaKnown RBP17.5■□□□□ 0.39
PTPRF-206ENST00000429895 ZC3H12CQ9C0D7 883 aaKnown RBP17.5■□□□□ 0.39
PTPRF-206ENST00000429895 MCM7P33993 719 aa17.49■□□□□ 0.39
PTPRF-206ENST00000429895 FBF1Q8TES7 1133 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms