RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 GPTP24298 496 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 TMPOP42166 694 aaKnown RBP7.78□□□□□ -1.16
SCN1A-204ENST00000423058 TUBB4BP68371 445 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 HACE1Q8IYU2 909 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 KIFAP3Q92845 792 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 LIMCH1Q9UPQ0 1083 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 EEF2P13639 858 aaKnown RBP7.78□□□□□ -1.16
SCN1A-204ENST00000423058 CCDC102BQ68D86 513 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 RRP36Q96EU6 259 aaKnown RBP7.78□□□□□ -1.16
SCN1A-204ENST00000423058 SWAP70Q9UH65 585 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 SYNJ1O43426 1573 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 DPH6Q7L8W6 267 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 CCDC50Q8IVM0 306 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 ZC3H12CQ9C0D7 883 aaKnown RBP7.78□□□□□ -1.16
SCN1A-204ENST00000423058 NACA2Q9H009 215 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 CSRNP2Q9H175 543 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 STK24Q9Y6E0 443 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 ZNF644Q9H582 1327 aaPredicted RBP7.78□□□□□ -1.16
SCN1A-204ENST00000423058 DYNC1I1O14576 645 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 ATP6V1AP38606 617 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 FSIP1Q8NA03 581 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 NAP1L4Q99733 375 aaKnown RBP7.78□□□□□ -1.16
SCN1A-204ENST00000423058 VEZTQ9HBM0 779 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 BICDL2A1A5D9 508 aa7.77□□□□□ -1.16
SCN1A-204ENST00000423058 TRIM7Q9C029 511 aa7.77□□□□□ -1.16
SCN1A-204ENST00000423058 DHX29Q7Z478 1369 aaKnown RBP7.77□□□□□ -1.17
SCN1A-204ENST00000423058 M0QZ92 97 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 HS2ST1Q7LGA3 356 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 HEATR3Q7Z4Q2 680 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 CCDC89Q8N998 374 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 NSMCE1Q8WV22 266 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 SLC26A6Q9BXS9 759 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 TRIM6Q9C030 488 aaPredicted RBP7.77□□□□□ -1.17
SCN1A-204ENST00000423058 SERPINA10Q9UK55 444 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 EXOC6BQ9Y2D4 811 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 RTL9Q8NET4 1388 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 KRT28Q7Z3Y7 464 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 SRGAP1Q7Z6B7 1085 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 CCDC125Q86Z20 511 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 PFDN4Q9NQP4 134 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 FRMD4BQ9Y2L6 1034 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 SNRPA1P09661 255 aaKnown RBP7.77□□□□□ -1.17
SCN1A-204ENST00000423058 FAM184BQ9ULE4 1060 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 DKC1O60832 514 aaKnown RBP eCLIP7.77□□□□□ -1.171e-7■■■■■ 34.3
SCN1A-204ENST00000423058 GEN1Q17RS7 908 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 KIFC2Q96AC6 838 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 HSPA4P34932 840 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 MAP7Q14244 749 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 MAP3K2Q9Y2U5 619 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.77□□□□□ -1.17
SCN1A-204ENST00000423058 RBM25P49756 843 aaKnown RBP7.77□□□□□ -1.17
SCN1A-204ENST00000423058 SMTNP53814 917 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 CCDC114Q96M63 670 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 CCDC94Q9BW85 323 aaPredicted RBP7.77□□□□□ -1.17
SCN1A-204ENST00000423058 PHF8Q9UPP1 1060 aa7.77□□□□□ -1.17
SCN1A-204ENST00000423058 PSMA7O14818 248 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 STX10O60499 249 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 NAPAP54920 295 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 GABPAQ06546 454 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 RSPH3Q86UC2 560 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 RTCBQ9Y3I0 505 aaKnown RBP7.76□□□□□ -1.17
SCN1A-204ENST00000423058 USP16Q9Y5T5 823 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 PIK3R4Q99570 1358 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 ERICH4A6NGS2 130 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 OPA1O60313 960 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 CCT2P78371 535 aaKnown RBP7.76□□□□□ -1.17
SCN1A-204ENST00000423058 WDR44Q5JSH3 913 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 MICU3Q86XE3 530 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 SIRT1Q96EB6 747 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 TSGA10Q9BZW7 698 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 SPC25Q9HBM1 224 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 SLC5A4Q9NY91 659 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 IVNS1ABPQ9Y6Y0 642 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 GNA11P29992 359 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 GUCY1B3Q02153 619 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 IQGAP2Q13576 1575 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 SYCE3A1L190 88 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 UBAP1LF5GYI3 381 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 RTN1Q16799 776 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 NAA16Q6N069 864 aaPredicted RBP7.76□□□□□ -1.17
SCN1A-204ENST00000423058 RNF34Q969K3 372 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 CD2APQ9Y5K6 639 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 AKR1B10O60218 316 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 CERS3Q8IU89 383 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 AKNAQ7Z591 1439 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 NKTRP30414 1462 aaKnown RBP7.76□□□□□ -1.17
SCN1A-204ENST00000423058 CC2D2AQ9P2K1 1620 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 PLCB3Q01970 1234 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 MUM1L1Q5H9M0 696 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 SPOUT1Q5T280 376 aaKnown RBP7.76□□□□□ -1.17
SCN1A-204ENST00000423058 ANKRD2Q9GZV1 360 aa7.76□□□□□ -1.17
SCN1A-204ENST00000423058 EIF4G3O43432 1585 aaKnown RBP7.76□□□□□ -1.17
SCN1A-204ENST00000423058 E7EVH7 732 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 SPAG1Q07617 926 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 CPLX3Q8WVH0 158 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 CALCOCO1Q9P1Z2 691 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 AGTPBP1Q9UPW5 1226 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 CD109Q6YHK3 1445 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 N4BP3O15049 544 aa7.75□□□□□ -1.17
SCN1A-204ENST00000423058 ATP5DP30049 168 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms