RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SLC5A1P13866 664 aa21.6■■□□□ 1.05
USP48-204ENST00000400301 MYOM1P52179 1685 aa21.6■■□□□ 1.05
USP48-204ENST00000400301 CAVIN2O95810 425 aa21.59■■□□□ 1.05
USP48-204ENST00000400301 SLC12A7Q9Y666 1083 aa21.59■■□□□ 1.05
USP48-204ENST00000400301 EXOC5O00471 708 aa21.59■■□□□ 1.05
USP48-204ENST00000400301 TTF1Q15361 905 aaPredicted RBP21.59■■□□□ 1.05
USP48-204ENST00000400301 CCDC47Q96A33 483 aaKnown RBP21.59■■□□□ 1.05
USP48-204ENST00000400301 PCMTD1Q96MG8 357 aaPredicted RBP21.59■■□□□ 1.05
USP48-204ENST00000400301 PPP1R9BQ96SB3 815 aa21.59■■□□□ 1.05
USP48-204ENST00000400301 EYA2O00167 538 aa21.59■■□□□ 1.05
USP48-204ENST00000400301 SLC3A2P08195 630 aaKnown RBP21.59■■□□□ 1.05
USP48-204ENST00000400301 BICDL1Q6ZP65 573 aa21.59■■□□□ 1.05
USP48-204ENST00000400301 CCDC186Q7Z3E2 898 aa21.59■■□□□ 1.05
USP48-204ENST00000400301 ZNF594Q96JF6 807 aaPredicted RBP21.59■■□□□ 1.05
USP48-204ENST00000400301 A0A1B0GUL7 405 aa21.58■■□□□ 1.05
USP48-204ENST00000400301 ADCK5Q3MIX3 580 aa21.58■■□□□ 1.05
USP48-204ENST00000400301 CFAP100Q494V2 611 aa21.58■■□□□ 1.05
USP48-204ENST00000400301 ZNF771Q7L3S4 317 aaPredicted RBP21.58■■□□□ 1.05
USP48-204ENST00000400301 PHKG2P15735 406 aa21.58■■□□□ 1.05
USP48-204ENST00000400301 POLA2Q14181 598 aa21.58■■□□□ 1.05
USP48-204ENST00000400301 METAP2P50579 478 aaKnown RBP eCLIP21.58■■□□□ 1.04
USP48-204ENST00000400301 CDC37L1Q7L3B6 337 aa21.58■■□□□ 1.04
USP48-204ENST00000400301 KBTBD3Q8NAB2 608 aa21.58■■□□□ 1.04
USP48-204ENST00000400301 IARSP41252 1262 aaKnown RBP21.57■■□□□ 1.04
USP48-204ENST00000400301 SLC9C2Q5TAH2 1124 aa21.57■■□□□ 1.04
USP48-204ENST00000400301 ZSWIM6Q9HCJ5 1215 aa21.57■■□□□ 1.04
USP48-204ENST00000400301 SFPQP23246 707 aaKnown RBP eCLIP21.57■■□□□ 1.04
USP48-204ENST00000400301 TMEM67Q5HYA8 995 aa21.57■■□□□ 1.04
USP48-204ENST00000400301 PRC1O43663 620 aa21.57■■□□□ 1.04
USP48-204ENST00000400301 ATP5JP18859 108 aa21.57■■□□□ 1.04
USP48-204ENST00000400301 PI4K2BQ8TCG2 481 aa21.57■■□□□ 1.04
USP48-204ENST00000400301 PDCL3Q9H2J4 239 aa21.57■■□□□ 1.04
USP48-204ENST00000400301 CBFA2T2O43439 604 aa21.56■■□□□ 1.04
USP48-204ENST00000400301 RAD21O60216 631 aa21.56■■□□□ 1.04
USP48-204ENST00000400301 IPO7O95373 1038 aaKnown RBP21.56■■□□□ 1.04
USP48-204ENST00000400301 TNNT1P13805 278 aa21.56■■□□□ 1.04
USP48-204ENST00000400301 DHX8Q14562 1220 aaKnown RBP21.56■■□□□ 1.04
USP48-204ENST00000400301 LUZP1Q86V48 1076 aa21.56■■□□□ 1.04
USP48-204ENST00000400301 COL3A1P02461 1466 aaPredicted RBP21.56■■□□□ 1.04
USP48-204ENST00000400301 PTPN14Q15678 1187 aa21.56■■□□□ 1.04
USP48-204ENST00000400301 FAM89AQ96GI7 184 aa21.56■■□□□ 1.04
USP48-204ENST00000400301 CRB1P82279 1406 aa21.56■■□□□ 1.04
USP48-204ENST00000400301 CCP110O43303 1012 aa21.56■■□□□ 1.04
USP48-204ENST00000400301 ARGLU1Q9NWB6 273 aaPredicted RBP21.56■■□□□ 1.04
USP48-204ENST00000400301 MTMR6Q9Y217 621 aa21.56■■□□□ 1.04
USP48-204ENST00000400301 USP31Q70CQ4 1352 aa21.55■■□□□ 1.04
USP48-204ENST00000400301 CD163L1Q9NR16 1453 aa21.55■■□□□ 1.04
USP48-204ENST00000400301 TLR7Q9NYK1 1049 aaKnown RBP21.55■■□□□ 1.04
USP48-204ENST00000400301 TPCN1Q9ULQ1 816 aa21.55■■□□□ 1.04
USP48-204ENST00000400301 PCDH11XQ9BZA7 1347 aa21.55■■□□□ 1.04
USP48-204ENST00000400301 PCDH11YQ9BZA8 1340 aa21.55■■□□□ 1.04
USP48-204ENST00000400301 JAK2O60674 1132 aa21.55■■□□□ 1.04
USP48-204ENST00000400301 FAM177A1Q8N128 213 aaPredicted RBP21.55■■□□□ 1.04
USP48-204ENST00000400301 HELLSQ9NRZ9 838 aa21.55■■□□□ 1.04
USP48-204ENST00000400301 DACH1Q9UI36 760 aa21.55■■□□□ 1.04
USP48-204ENST00000400301 HSPA2P54652 639 aa21.55■■□□□ 1.04
USP48-204ENST00000400301 ISM2Q6H9L7 571 aa21.55■■□□□ 1.04
USP48-204ENST00000400301 PIBF1Q8WXW3 757 aa21.55■■□□□ 1.04
USP48-204ENST00000400301 TRMT1Q9NXH9 659 aaKnown RBP21.55■■□□□ 1.04
USP48-204ENST00000400301 FILIP1LQ4L180 1135 aa21.54■■□□□ 1.04
USP48-204ENST00000400301 MRPS27Q92552 414 aaKnown RBP21.54■■□□□ 1.04
USP48-204ENST00000400301 DYNC1I1O14576 645 aa21.54■■□□□ 1.04
USP48-204ENST00000400301 PDCL2Q8N4E4 241 aa21.54■■□□□ 1.04
USP48-204ENST00000400301 CCDC196A0A1B0GTZ2 297 aa21.54■■□□□ 1.04
USP48-204ENST00000400301 CCDC191Q8NCU4 936 aa21.54■■□□□ 1.04
USP48-204ENST00000400301 CDC42BPGQ6DT37 1551 aa21.53■■□□□ 1.04
USP48-204ENST00000400301 SSRP1Q08945 709 aaKnown RBP21.53■■□□□ 1.04
USP48-204ENST00000400301 NCOA5Q9HCD5 579 aaKnown RBP21.53■■□□□ 1.04
USP48-204ENST00000400301 PRIMPOLQ96LW4 560 aa21.53■■□□□ 1.04
USP48-204ENST00000400301 SEC62Q99442 399 aaKnown RBP21.53■■□□□ 1.04
USP48-204ENST00000400301 CLTCQ00610 1675 aaKnown RBP21.53■■□□□ 1.04
USP48-204ENST00000400301 UQCRFS1P1P0C7P4 283 aa21.53■■□□□ 1.04
USP48-204ENST00000400301 ADAMTS2O95450 1211 aa21.52■■□□□ 1.04
USP48-204ENST00000400301 ALG1Q9BT22 464 aa21.52■■□□□ 1.04
USP48-204ENST00000400301 TXLNAP40222 546 aa21.52■■□□□ 1.04
USP48-204ENST00000400301 MAP4K1Q92918 833 aa21.52■■□□□ 1.04
USP48-204ENST00000400301 TTLL5Q6EMB2 1281 aa21.52■■□□□ 1.04
USP48-204ENST00000400301 CNNM3Q8NE01 707 aa21.52■■□□□ 1.04
USP48-204ENST00000400301 HELBQ8NG08 1087 aaPredicted RBP21.52■■□□□ 1.04
USP48-204ENST00000400301 KCNG4Q8TDN1 519 aa21.52■■□□□ 1.04
USP48-204ENST00000400301 LEO1Q8WVC0 666 aaPredicted RBP21.52■■□□□ 1.04
USP48-204ENST00000400301 SLC26A6Q9BXS9 759 aa21.52■■□□□ 1.04
USP48-204ENST00000400301 OVOS2A0A0J9YW53 1432 aa21.52■■□□□ 1.03
USP48-204ENST00000400301 OVOS2Q6IE36 1432 aa21.52■■□□□ 1.03
USP48-204ENST00000400301 ARHGEF28Q8N1W1 1705 aaKnown RBP21.51■■□□□ 1.03
USP48-204ENST00000400301 ZBTB43O43298 467 aa21.51■■□□□ 1.03
USP48-204ENST00000400301 NSFL1CQ9UNZ2 370 aaKnown RBP21.51■■□□□ 1.03
USP48-204ENST00000400301 ANKARQ7Z5J8 1434 aa21.51■■□□□ 1.03
USP48-204ENST00000400301 ATP10DQ9P241 1426 aa21.51■■□□□ 1.03
USP48-204ENST00000400301 PTGS1P23219 599 aa21.51■■□□□ 1.03
USP48-204ENST00000400301 ZNF652Q9Y2D9 606 aa21.51■■□□□ 1.03
USP48-204ENST00000400301 RANBP6O60518 1105 aaKnown RBP21.5■■□□□ 1.03
USP48-204ENST00000400301 NEMFO60524 1076 aa21.5■■□□□ 1.03
USP48-204ENST00000400301 MFSD6Q6ZSS7 791 aa21.5■■□□□ 1.03
USP48-204ENST00000400301 PREX1Q8TCU6 1659 aa21.5■■□□□ 1.03
USP48-204ENST00000400301 RNF41Q9H4P4 317 aaPredicted RBP21.5■■□□□ 1.03
USP48-204ENST00000400301 COPRSQ9NQ92 184 aa21.5■■□□□ 1.03
USP48-204ENST00000400301 CAVIN4Q5BKX8 364 aa21.5■■□□□ 1.03
USP48-204ENST00000400301 DBNLQ9UJU6 430 aaKnown RBP21.5■■□□□ 1.03
USP48-204ENST00000400301 MARCKSP29966 332 aaPredicted RBP21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms