RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 MAP3K9P80192 1104 aa21.49■■□□□ 1.03
SMPD1-201ENST00000342245 SART3Q15020 963 aaKnown RBP21.49■■□□□ 1.03
SMPD1-201ENST00000342245 HDXQ7Z353 690 aa21.49■■□□□ 1.03
SMPD1-201ENST00000342245 PARD6BQ9BYG5 372 aa21.49■■□□□ 1.03
SMPD1-201ENST00000342245 MAP2P11137 1827 aaKnown RBP21.49■■□□□ 1.03
SMPD1-201ENST00000342245 A0A087WUV0 522 aaPredicted RBP21.49■■□□□ 1.03
SMPD1-201ENST00000342245 APOBRQ0VD83 1088 aa21.49■■□□□ 1.03
SMPD1-201ENST00000342245 AOPEPQ8N6M6 819 aa21.49■■□□□ 1.03
SMPD1-201ENST00000342245 ATP6V1AP38606 617 aa21.48■■□□□ 1.03
SMPD1-201ENST00000342245 TXLNAP40222 546 aa21.48■■□□□ 1.03
SMPD1-201ENST00000342245 SATB1Q01826 763 aa21.48■■□□□ 1.03
SMPD1-201ENST00000342245 NECAB1Q8N987 351 aa21.48■■□□□ 1.03
SMPD1-201ENST00000342245 PI4K2BQ8TCG2 481 aa21.48■■□□□ 1.03
SMPD1-201ENST00000342245 TPCN1Q9ULQ1 816 aa21.48■■□□□ 1.03
SMPD1-201ENST00000342245 H3BQF6 201 aa21.48■■□□□ 1.03
SMPD1-201ENST00000342245 PPP2R3AQ06190 1150 aa21.48■■□□□ 1.03
SMPD1-201ENST00000342245 GNL2Q13823 731 aaKnown RBP21.48■■□□□ 1.03
SMPD1-201ENST00000342245 SLC4A10Q6U841 1118 aa21.48■■□□□ 1.03
SMPD1-201ENST00000342245 TACO1Q9BSH4 297 aaKnown RBP21.48■■□□□ 1.03
SMPD1-201ENST00000342245 VPS18Q9P253 973 aa21.48■■□□□ 1.03
SMPD1-201ENST00000342245 ITSN1Q15811 1721 aa21.48■■□□□ 1.03
SMPD1-201ENST00000342245 SOS1Q07889 1333 aaPredicted RBP21.47■■□□□ 1.03
SMPD1-201ENST00000342245 CPA1P15085 419 aa21.47■■□□□ 1.03
SMPD1-201ENST00000342245 EIF5P55010 431 aaKnown RBP21.47■■□□□ 1.03
SMPD1-201ENST00000342245 ATL3Q6DD88 541 aa21.47■■□□□ 1.03
SMPD1-201ENST00000342245 ERLIN1O75477 346 aa21.47■■□□□ 1.03
SMPD1-201ENST00000342245 ANKRD20A12PQ8NF67 263 aa21.47■■□□□ 1.03
SMPD1-201ENST00000342245 ADCY9O60503 1353 aa21.46■■□□□ 1.03
SMPD1-201ENST00000342245 PNMA6EA0A0J9YXQ4 647 aa21.46■■□□□ 1.03
SMPD1-201ENST00000342245 MAP2K2P36507 400 aa21.46■■□□□ 1.03
SMPD1-201ENST00000342245 LARP1Q6PKG0 1096 aaKnown RBP21.46■■□□□ 1.03
SMPD1-201ENST00000342245 TADA2BQ86TJ2 420 aa21.46■■□□□ 1.03
SMPD1-201ENST00000342245 CCAR1Q8IX12 1150 aaKnown RBP21.46■■□□□ 1.03
SMPD1-201ENST00000342245 XPO4Q9C0E2 1151 aaKnown RBP21.46■■□□□ 1.03
SMPD1-201ENST00000342245 ACBD3Q9H3P7 528 aa21.46■■□□□ 1.03
SMPD1-201ENST00000342245 KCNG1Q9UIX4 513 aa21.46■■□□□ 1.03
SMPD1-201ENST00000342245 MRFAP1Q9Y605 127 aa21.46■■□□□ 1.03
SMPD1-201ENST00000342245 FAM83GA6ND36 823 aa21.45■■□□□ 1.02
SMPD1-201ENST00000342245 RESTQ13127 1097 aa21.45■■□□□ 1.02
SMPD1-201ENST00000342245 CWC27Q6UX04 472 aaKnown RBP21.45■■□□□ 1.02
SMPD1-201ENST00000342245 MINK1Q8N4C8 1332 aaPredicted RBP21.45■■□□□ 1.02
SMPD1-201ENST00000342245 ADCK5Q3MIX3 580 aa21.45■■□□□ 1.02
SMPD1-201ENST00000342245 PRPF40BQ6NWY9 871 aaKnown RBP21.45■■□□□ 1.02
SMPD1-201ENST00000342245 DHX37Q8IY37 1157 aaKnown RBP21.45■■□□□ 1.02
SMPD1-201ENST00000342245 PPFIA4O75335 1185 aa21.44■■□□□ 1.02
SMPD1-201ENST00000342245 USP5P45974 858 aa21.44■■□□□ 1.02
SMPD1-201ENST00000342245 FAM160A1Q05DH4 1040 aa21.44■■□□□ 1.02
SMPD1-201ENST00000342245 TRDNQ13061 729 aa21.44■■□□□ 1.02
SMPD1-201ENST00000342245 FBXO31Q5XUX0 539 aaPredicted RBP21.44■■□□□ 1.02
SMPD1-201ENST00000342245 FAM71BQ8TC56 605 aa21.44■■□□□ 1.02
SMPD1-201ENST00000342245 SUFUQ9UMX1 484 aa21.44■■□□□ 1.02
SMPD1-201ENST00000342245 NECTIN1Q15223 517 aa21.44■■□□□ 1.02
SMPD1-201ENST00000342245 DNAJC21Q5F1R6 531 aaKnown RBP21.44■■□□□ 1.02
SMPD1-201ENST00000342245 UTP14AQ9BVJ6 771 aaKnown RBP21.44■■□□□ 1.02
SMPD1-201ENST00000342245 IFNKQ9P0W0 207 aa21.44■■□□□ 1.02
SMPD1-201ENST00000342245 RCOR1Q9UKL0 485 aa21.44■■□□□ 1.02
SMPD1-201ENST00000342245 SPG7Q9UQ90 795 aa21.44■■□□□ 1.02
SMPD1-201ENST00000342245 RICTORQ6R327 1708 aa21.43■■□□□ 1.02
SMPD1-201ENST00000342245 TUBBP07437 444 aa21.43■■□□□ 1.02
SMPD1-201ENST00000342245 DNAAF4Q8WXU2 420 aa21.43■■□□□ 1.02
SMPD1-201ENST00000342245 USP42Q9H9J4 1324 aaKnown RBP21.43■■□□□ 1.02
SMPD1-201ENST00000342245 N4BP2Q86UW6 1770 aaPredicted RBP21.43■■□□□ 1.02
SMPD1-201ENST00000342245 HSP90B2PQ58FF3 399 aa21.43■■□□□ 1.02
SMPD1-201ENST00000342245 ERC1Q8IUD2 1116 aa21.43■■□□□ 1.02
SMPD1-201ENST00000342245 SYTL4Q96C24 671 aaPredicted RBP21.43■■□□□ 1.02
SMPD1-201ENST00000342245 MAP3K5Q99683 1374 aa21.42■■□□□ 1.02
SMPD1-201ENST00000342245 CBFA2T2O43439 604 aa21.42■■□□□ 1.02
SMPD1-201ENST00000342245 E2F4Q16254 413 aa21.42■■□□□ 1.02
SMPD1-201ENST00000342245 SSH3Q8TE77 659 aa21.41■■□□□ 1.02
SMPD1-201ENST00000342245 DDX11Q96FC9 970 aa21.41■■□□□ 1.02
SMPD1-201ENST00000342245 GBP3Q9H0R5 595 aa21.41■■□□□ 1.02
SMPD1-201ENST00000342245 PDE11AQ9HCR9 933 aa21.41■■□□□ 1.02
SMPD1-201ENST00000342245 MYO5BQ9ULV0 1848 aa21.41■■□□□ 1.02
SMPD1-201ENST00000342245 NUTM1Q86Y26 1132 aa21.41■■□□□ 1.02
SMPD1-201ENST00000342245 GLRX3O76003 335 aaKnown RBP21.4■■□□□ 1.02
SMPD1-201ENST00000342245 TUBB2AQ13885 445 aa21.4■■□□□ 1.02
SMPD1-201ENST00000342245 DCTN1Q14203 1278 aa21.4■■□□□ 1.02
SMPD1-201ENST00000342245 ENGASEQ8NFI3 743 aa21.4■■□□□ 1.02
SMPD1-201ENST00000342245 TUBB2BQ9BVA1 445 aa21.4■■□□□ 1.02
SMPD1-201ENST00000342245 ATP7BP35670 1465 aa21.4■■□□□ 1.02
SMPD1-201ENST00000342245 ARHGAP6O43182 974 aa21.4■■□□□ 1.02
SMPD1-201ENST00000342245 LRRC31Q6UY01 552 aa21.4■■□□□ 1.02
SMPD1-201ENST00000342245 RAB21Q9UL25 225 aa21.4■■□□□ 1.02
SMPD1-201ENST00000342245 H3BQV1 296 aa21.39■■□□□ 1.02
SMPD1-201ENST00000342245 BEND6Q5SZJ8 279 aaPredicted RBP21.39■■□□□ 1.02
SMPD1-201ENST00000342245 IFFO2Q5TF58 517 aa21.39■■□□□ 1.02
SMPD1-201ENST00000342245 CCDC30Q5VVM6 783 aa21.39■■□□□ 1.02
SMPD1-201ENST00000342245 MAP4K4O95819 1239 aaPredicted RBP21.39■■□□□ 1.01
SMPD1-201ENST00000342245 TDO2P48775 406 aa21.39■■□□□ 1.01
SMPD1-201ENST00000342245 FOXR1Q6PIV2 292 aa21.39■■□□□ 1.01
SMPD1-201ENST00000342245 BLOC1S2Q6QNY1 142 aa21.39■■□□□ 1.01
SMPD1-201ENST00000342245 PXDNLA1KZ92 1463 aa21.39■■□□□ 1.01
SMPD1-201ENST00000342245 MYH15Q9Y2K3 1946 aa21.39■■□□□ 1.01
SMPD1-201ENST00000342245 F6X3S4 739 aa21.38■■□□□ 1.01
SMPD1-201ENST00000342245 MYO1BO43795 1136 aa21.38■■□□□ 1.01
SMPD1-201ENST00000342245 PTH1RQ03431 593 aa21.38■■□□□ 1.01
SMPD1-201ENST00000342245 CREB3L3Q68CJ9 461 aa21.38■■□□□ 1.01
SMPD1-201ENST00000342245 EP400NLQ6ZTU2 488 aa21.38■■□□□ 1.01
SMPD1-201ENST00000342245 ZNF396Q96N95 335 aaPredicted RBP21.38■■□□□ 1.01
SMPD1-201ENST00000342245 IL1RAPL2Q9NP60 686 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms