RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SELENOSQ9BQE4 189 aa14.37□□□□□ -0.11
SDC3-201ENST00000336798 GTPBP4Q9BZE4 634 aaKnown RBP14.37□□□□□ -0.11
SDC3-201ENST00000336798 CCDC6Q16204 474 aa14.36□□□□□ -0.11
SDC3-201ENST00000336798 TAF12Q16514 161 aa14.36□□□□□ -0.11
SDC3-201ENST00000336798 ANO6Q4KMQ2 910 aa14.36□□□□□ -0.11
SDC3-201ENST00000336798 GRIN2BQ13224 1484 aa14.36□□□□□ -0.11
SDC3-201ENST00000336798 OGFOD1Q8N543 542 aa14.36□□□□□ -0.11
SDC3-201ENST00000336798 HELBQ8NG08 1087 aaPredicted RBP14.36□□□□□ -0.11
SDC3-201ENST00000336798 BIN2Q9UBW5 565 aaPredicted RBP14.36□□□□□ -0.11
SDC3-201ENST00000336798 CLGNO14967 610 aa14.36□□□□□ -0.11
SDC3-201ENST00000336798 SH3BP5O60239 455 aa14.36□□□□□ -0.11
SDC3-201ENST00000336798 CKAP4Q07065 602 aaKnown RBP14.36□□□□□ -0.11
SDC3-201ENST00000336798 KANK3Q6NY19 840 aa14.36□□□□□ -0.11
SDC3-201ENST00000336798 Q6ZUG5 572 aa14.36□□□□□ -0.11
SDC3-201ENST00000336798 C16orf71Q8IYS4 520 aaPredicted RBP14.36□□□□□ -0.11
SDC3-201ENST00000336798 NKTRP30414 1462 aaKnown RBP14.36□□□□□ -0.11
SDC3-201ENST00000336798 WASLO00401 505 aaPredicted RBP14.36□□□□□ -0.11
SDC3-201ENST00000336798 RXRAP19793 462 aa14.36□□□□□ -0.11
SDC3-201ENST00000336798 NAA16Q6N069 864 aaPredicted RBP14.36□□□□□ -0.11
SDC3-201ENST00000336798 ANKRD13DQ6ZTN6 518 aa14.36□□□□□ -0.11
SDC3-201ENST00000336798 FAM13AO94988 1023 aa14.35□□□□□ -0.11
SDC3-201ENST00000336798 IFI16Q16666 785 aaKnown RBP14.35□□□□□ -0.11
SDC3-201ENST00000336798 NIP7Q9Y221 180 aaKnown RBP eCLIP14.35□□□□□ -0.11
SDC3-201ENST00000336798 NBPF7P0C2Y1 421 aaPredicted RBP14.35□□□□□ -0.11
SDC3-201ENST00000336798 HARSP12081 509 aaKnown RBP14.35□□□□□ -0.11
SDC3-201ENST00000336798 LRRC27Q9C0I9 530 aa14.35□□□□□ -0.11
SDC3-201ENST00000336798 RMND1Q9NWS8 449 aa14.35□□□□□ -0.11
SDC3-201ENST00000336798 DYNC1I1O14576 645 aa14.35□□□□□ -0.11
SDC3-201ENST00000336798 SNRPA1P09661 255 aaKnown RBP14.35□□□□□ -0.11
SDC3-201ENST00000336798 STX17P56962 302 aa14.35□□□□□ -0.11
SDC3-201ENST00000336798 SPATA24Q86W54 205 aa14.35□□□□□ -0.11
SDC3-201ENST00000336798 XAGE3Q8WTP9 111 aa14.35□□□□□ -0.11
SDC3-201ENST00000336798 SREK1Q8WXA9 508 aaKnown RBP14.35□□□□□ -0.11
SDC3-201ENST00000336798 PTPRCP08575 1304 aa14.35□□□□□ -0.11
SDC3-201ENST00000336798 POTEB2H3BUK9 544 aa14.35□□□□□ -0.11
SDC3-201ENST00000336798 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.35□□□□□ -0.11
SDC3-201ENST00000336798 V9GYY5 206 aaPredicted RBP14.35□□□□□ -0.11
SDC3-201ENST00000336798 TNNI2P48788 182 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 AOPEPQ8N6M6 819 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 KIF4AO95239 1232 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 MCM7P33993 719 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 LRRC45Q96CN5 670 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 KRT23Q9C075 422 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 UQCRFS1P1P0C7P4 283 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 CCDC172P0C7W6 258 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 MCM6Q14566 821 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 CCDC25Q86WR0 208 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 MNAT1P51948 309 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 ZSCAN23Q3MJ62 389 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 CFAP58Q5T655 872 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 TTC22Q5TAA0 569 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 SLC9C2Q5TAH2 1124 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 SMAP1Q8IYB5 467 aaPredicted RBP14.34□□□□□ -0.11
SDC3-201ENST00000336798 IMPG2Q9BZV3 1241 aa14.34□□□□□ -0.11
SDC3-201ENST00000336798 DNAI1Q9UI46 699 aa14.33□□□□□ -0.11
SDC3-201ENST00000336798 DAPK1P53355 1430 aa14.33□□□□□ -0.11
SDC3-201ENST00000336798 ESR2Q92731 530 aa14.33□□□□□ -0.12
SDC3-201ENST00000336798 TEX13AQ9BXU3 409 aaPredicted RBP14.33□□□□□ -0.12
SDC3-201ENST00000336798 PA2G4Q9UQ80 394 aaKnown RBP14.33□□□□□ -0.12
SDC3-201ENST00000336798 MRC2Q9UBG0 1479 aa14.33□□□□□ -0.12
SDC3-201ENST00000336798 PLEKHH2Q8IVE3 1493 aa14.33□□□□□ -0.12
SDC3-201ENST00000336798 MAGEB6P1A0A0J9YX57 407 aa14.33□□□□□ -0.12
SDC3-201ENST00000336798 DNAJC21Q5F1R6 531 aaKnown RBP14.33□□□□□ -0.12
SDC3-201ENST00000336798 COPS6Q7L5N1 327 aa14.33□□□□□ -0.12
SDC3-201ENST00000336798 SIRT1Q96EB6 747 aa14.33□□□□□ -0.12
SDC3-201ENST00000336798 WDR97A6NE52 1622 aa14.33□□□□□ -0.12
SDC3-201ENST00000336798 UBE2HP62256 183 aa14.33□□□□□ -0.12
SDC3-201ENST00000336798 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.33□□□□□ -0.12
SDC3-201ENST00000336798 FAM170AA1A519 330 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 ATRIPQ8WXE1 791 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 SAP30BPQ9UHR5 308 aaKnown RBP14.32□□□□□ -0.12
SDC3-201ENST00000336798 ADGRF5Q8IZF2 1346 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 IGHDP01880 384 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 ZKSCAN3Q9BRR0 538 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 SELENOOQ9BVL4 669 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 EPRSP07814 1512 aaKnown RBP14.32□□□□□ -0.12
SDC3-201ENST00000336798 RASA3Q14644 834 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 RHPN1Q8TCX5 695 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 PIK3R4Q99570 1358 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 SPDYE3A6NKU9 549 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 NEMFO60524 1076 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 KARSQ15046 597 aaKnown RBP14.32□□□□□ -0.12
SDC3-201ENST00000336798 PYM1Q9BRP8 204 aaKnown RBP14.32□□□□□ -0.12
SDC3-201ENST00000336798 ZNF408Q9H9D4 720 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 C6orf50Q9HD87 102 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 ZWINTO95229 277 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 CYLC1P35663 651 aaPredicted RBP14.32□□□□□ -0.12
SDC3-201ENST00000336798 ZBTB16Q05516 673 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 TMX3Q96JJ7 454 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 DNAJC25Q9H1X3 360 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 RASAL2Q9UJF2 1139 aa14.32□□□□□ -0.12
SDC3-201ENST00000336798 ZSCAN22P10073 491 aaPredicted RBP14.31□□□□□ -0.12
SDC3-201ENST00000336798 CCDC114Q96M63 670 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 RBM8AQ9Y5S9 174 aaKnown RBP14.31□□□□□ -0.12
SDC3-201ENST00000336798 GJA3Q9Y6H8 435 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 IRX5P78411 483 aaPredicted RBP14.31□□□□□ -0.12
SDC3-201ENST00000336798 PPARDQ03181 441 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 MAGEB6Q8N7X4 407 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 CABLES1Q8TDN4 633 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 MRRFQ96E11 262 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms