RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 CCDC8Q9H0W5 538 aaPredicted RBP18.24■□□□□ 0.51
CCDC88C-202ENST00000334448 BSDC1Q9NW68 430 aaPredicted RBP18.24■□□□□ 0.51
CCDC88C-202ENST00000334448 A0A1B0GUL7 405 aa18.23■□□□□ 0.51
CCDC88C-202ENST00000334448 FGFR2P21802 821 aa18.23■□□□□ 0.51
CCDC88C-202ENST00000334448 TBC1D9Q6ZT07 1266 aa18.23■□□□□ 0.51
CCDC88C-202ENST00000334448 ANKRD18AQ8IVF6 992 aa18.23■□□□□ 0.51
CCDC88C-202ENST00000334448 MPHOSPH8Q99549 860 aa18.23■□□□□ 0.51
CCDC88C-202ENST00000334448 DBNDD2Q9BQY9 259 aa18.23■□□□□ 0.51
CCDC88C-202ENST00000334448 RBM19Q9Y4C8 960 aaKnown RBP18.23■□□□□ 0.51
CCDC88C-202ENST00000334448 CASZ1Q86V15 1759 aa18.22■□□□□ 0.51
CCDC88C-202ENST00000334448 COL4A1P02462 1669 aa18.22■□□□□ 0.51
CCDC88C-202ENST00000334448 RFX7Q2KHR2 1363 aa18.22■□□□□ 0.51
CCDC88C-202ENST00000334448 HOXA10P31260 410 aaPredicted RBP18.22■□□□□ 0.51
CCDC88C-202ENST00000334448 PUM3Q15397 648 aaKnown RBP18.22■□□□□ 0.51
CCDC88C-202ENST00000334448 ATP2B3Q16720 1220 aa18.22■□□□□ 0.51
CCDC88C-202ENST00000334448 ZNF512BQ96KM6 892 aaPredicted RBP18.22■□□□□ 0.51
CCDC88C-202ENST00000334448 SLC16A10Q8TF71 515 aa18.21■□□□□ 0.51
CCDC88C-202ENST00000334448 BRIP1Q9BX63 1249 aa18.21■□□□□ 0.51
CCDC88C-202ENST00000334448 ARAP2Q8WZ64 1704 aa18.2■□□□□ 0.5
CCDC88C-202ENST00000334448 ZBTB22O15209 634 aa18.2■□□□□ 0.5
CCDC88C-202ENST00000334448 MMP10P09238 476 aa18.2■□□□□ 0.5
CCDC88C-202ENST00000334448 RPS8P62241 208 aaKnown RBP18.2■□□□□ 0.5
CCDC88C-202ENST00000334448 GRAPQ13588 217 aa18.2■□□□□ 0.5
CCDC88C-202ENST00000334448 DDX46Q7L014 1031 aaKnown RBP18.2■□□□□ 0.5
CCDC88C-202ENST00000334448 CNTROBQ8N137 903 aa18.2■□□□□ 0.5
CCDC88C-202ENST00000334448 GRAPLQ8TC17 118 aaPredicted RBP18.2■□□□□ 0.5
CCDC88C-202ENST00000334448 LPIN2Q92539 896 aa18.2■□□□□ 0.5
CCDC88C-202ENST00000334448 NPHP1O15259 732 aa18.19■□□□□ 0.5
CCDC88C-202ENST00000334448 MSH5O43196 834 aa18.19■□□□□ 0.5
CCDC88C-202ENST00000334448 TIMM10P62072 90 aa18.19■□□□□ 0.5
CCDC88C-202ENST00000334448 CASC1Q6TDU7 716 aa18.19■□□□□ 0.5
CCDC88C-202ENST00000334448 CELF1Q92879 486 aaKnown RBP18.19■□□□□ 0.5
CCDC88C-202ENST00000334448 EVI5LQ96CN4 794 aa18.19■□□□□ 0.5
CCDC88C-202ENST00000334448 HAUS7Q99871 368 aa18.19■□□□□ 0.5
CCDC88C-202ENST00000334448 BCL11AQ9H165 835 aa18.19■□□□□ 0.5
CCDC88C-202ENST00000334448 SEC24BO95487 1268 aa18.18■□□□□ 0.5
CCDC88C-202ENST00000334448 XAGE2Q96GT9 111 aa18.18■□□□□ 0.5
CCDC88C-202ENST00000334448 CRAMP1Q96RY5 1269 aa18.18■□□□□ 0.5
CCDC88C-202ENST00000334448 PARP3Q9Y6F1 533 aa18.18■□□□□ 0.5
CCDC88C-202ENST00000334448 SPEF2Q9C093 1822 aa18.17■□□□□ 0.5
CCDC88C-202ENST00000334448 CHRNDQ07001 517 aa18.17■□□□□ 0.5
CCDC88C-202ENST00000334448 MINPP1Q9UNW1 487 aa18.17■□□□□ 0.5
CCDC88C-202ENST00000334448 A0A1B0GUL6 1792 aa18.17■□□□□ 0.5
CCDC88C-202ENST00000334448 TRIM6-TRIM34B2RNG4 842 aa18.16■□□□□ 0.5
CCDC88C-202ENST00000334448 SLC5A1P13866 664 aa18.16■□□□□ 0.5
CCDC88C-202ENST00000334448 CHMLP26374 656 aa18.16■□□□□ 0.5
CCDC88C-202ENST00000334448 UBE4AQ14139 1066 aa18.16■□□□□ 0.5
CCDC88C-202ENST00000334448 TMC4Q7Z404 712 aa18.16■□□□□ 0.5
CCDC88C-202ENST00000334448 CCDC24Q8N4L8 307 aa18.16■□□□□ 0.5
CCDC88C-202ENST00000334448 NEUROD6Q96NK8 337 aa18.16■□□□□ 0.5
CCDC88C-202ENST00000334448 ANKRD2Q9GZV1 360 aa18.16■□□□□ 0.5
CCDC88C-202ENST00000334448 UPF2Q9HAU5 1272 aaKnown RBP18.16■□□□□ 0.5
CCDC88C-202ENST00000334448 ANKRD31Q8N7Z5 1873 aa18.16■□□□□ 0.5
CCDC88C-202ENST00000334448 EPB41L2O43491 1005 aaKnown RBP18.15■□□□□ 0.5
CCDC88C-202ENST00000334448 ADORA1P30542 326 aa18.15■□□□□ 0.5
CCDC88C-202ENST00000334448 CCDC158Q5M9N0 1113 aa18.15■□□□□ 0.5
CCDC88C-202ENST00000334448 RPGRQ92834 1020 aaKnown RBP18.15■□□□□ 0.5
CCDC88C-202ENST00000334448 RBM17Q96I25 401 aaKnown RBP18.15■□□□□ 0.5
CCDC88C-202ENST00000334448 HIP1O00291 1037 aa18.14■□□□□ 0.49
CCDC88C-202ENST00000334448 BBOX1O75936 387 aa18.14■□□□□ 0.49
CCDC88C-202ENST00000334448 IFIT1P09914 478 aaKnown RBP18.14■□□□□ 0.49
CCDC88C-202ENST00000334448 ARID4AP29374 1257 aaPredicted RBP18.14■□□□□ 0.49
CCDC88C-202ENST00000334448 PDE6BP35913 854 aa18.14■□□□□ 0.49
CCDC88C-202ENST00000334448 UPF1Q92900 1129 aaKnown RBP eCLIP18.14■□□□□ 0.49
CCDC88C-202ENST00000334448 RILPL2Q969X0 211 aa18.14■□□□□ 0.49
CCDC88C-202ENST00000334448 TBC1D32Q96NH3 1257 aa18.14■□□□□ 0.49
CCDC88C-202ENST00000334448 BOLA2Q9H3K6 86 aa18.14■□□□□ 0.49
CCDC88C-202ENST00000334448 ZNF804BA4D1E1 1349 aa18.14■□□□□ 0.49
CCDC88C-202ENST00000334448 LRRC37AA6NMS7 1700 aa18.13■□□□□ 0.49
CCDC88C-202ENST00000334448 UQCRFS1P1P0C7P4 283 aa18.13■□□□□ 0.49
CCDC88C-202ENST00000334448 SRGNP10124 158 aa18.13■□□□□ 0.49
CCDC88C-202ENST00000334448 ESYT1Q9BSJ8 1104 aa18.13■□□□□ 0.49
CCDC88C-202ENST00000334448 SNRKQ9NRH2 765 aa18.13■□□□□ 0.49
CCDC88C-202ENST00000334448 C10orf71Q711Q0 1435 aa18.13■□□□□ 0.49
CCDC88C-202ENST00000334448 NPR1P16066 1061 aa18.12■□□□□ 0.49
CCDC88C-202ENST00000334448 TTC39AQ5SRH9 613 aa18.12■□□□□ 0.49
CCDC88C-202ENST00000334448 GORABQ5T7V8 394 aa18.12■□□□□ 0.49
CCDC88C-202ENST00000334448 MSL1Q68DK7 614 aa18.12■□□□□ 0.49
CCDC88C-202ENST00000334448 HELBQ8NG08 1087 aaPredicted RBP18.12■□□□□ 0.49
CCDC88C-202ENST00000334448 REC8O95072 547 aa18.11■□□□□ 0.49
CCDC88C-202ENST00000334448 RBM25P49756 843 aaKnown RBP18.11■□□□□ 0.49
CCDC88C-202ENST00000334448 CCDC102BQ68D86 513 aa18.11■□□□□ 0.49
CCDC88C-202ENST00000334448 C15orf52Q6ZUT6 534 aaKnown RBP18.11■□□□□ 0.49
CCDC88C-202ENST00000334448 KBTBD3Q8NAB2 608 aa18.11■□□□□ 0.49
CCDC88C-202ENST00000334448 RAD50Q92878 1312 aa18.11■□□□□ 0.49
CCDC88C-202ENST00000334448 IRS2Q9Y4H2 1338 aa18.11■□□□□ 0.49
CCDC88C-202ENST00000334448 SGSM2O43147 1006 aa18.1■□□□□ 0.49
CCDC88C-202ENST00000334448 TAF5LO75529 589 aa18.1■□□□□ 0.49
CCDC88C-202ENST00000334448 MFAP1P55081 439 aaKnown RBP18.1■□□□□ 0.49
CCDC88C-202ENST00000334448 PAG1Q9NWQ8 432 aa18.1■□□□□ 0.49
CCDC88C-202ENST00000334448 LEMD3Q9Y2U8 911 aa18.1■□□□□ 0.49
CCDC88C-202ENST00000334448 COL11A2P13942 1736 aaPredicted RBP18.09■□□□□ 0.49
CCDC88C-202ENST00000334448 XDHP47989 1333 aa18.09■□□□□ 0.49
CCDC88C-202ENST00000334448 PDS5AQ29RF7 1337 aaKnown RBP18.09■□□□□ 0.49
CCDC88C-202ENST00000334448 MAP4K4O95819 1239 aaPredicted RBP18.09■□□□□ 0.49
CCDC88C-202ENST00000334448 PHKA1P46020 1223 aa18.09■□□□□ 0.49
CCDC88C-202ENST00000334448 STYK1Q6J9G0 422 aa18.09■□□□□ 0.49
CCDC88C-202ENST00000334448 RUFY2Q8WXA3 655 aa18.09■□□□□ 0.49
CCDC88C-202ENST00000334448 PODXL2Q9NZ53 605 aa18.09■□□□□ 0.49
CCDC88C-202ENST00000334448 MASTLQ96GX5 879 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms