RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 NLGN1Q8N2Q7 840 aa10.15□□□□□ -0.79
PDLIM5-201ENST00000317968 CRACR2BQ8N4Y2 399 aaPredicted RBP10.15□□□□□ -0.79
PDLIM5-201ENST00000317968 HSPA1LP34931 641 aa10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 RBM25P49756 843 aaKnown RBP10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 RAI14Q9P0K7 980 aa10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 TRPM3Q9HCF6 1732 aaPredicted RBP10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 RABL6Q3YEC7 729 aaPredicted RBP10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 NLRP10Q86W26 655 aa10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 CNBD1Q8NA66 436 aa10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 IMMTQ16891 758 aaKnown RBP10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 MARCH10Q8NA82 808 aaPredicted RBP10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 LPIN2Q92539 896 aa10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 BCL9O00512 1426 aa10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 RGPD1P0DJD0 1748 aa10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 SUPT20HQ8NEM7 779 aa10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 FAM89AQ96GI7 184 aa10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 SLKQ9H2G2 1235 aaPredicted RBP10.14□□□□□ -0.79
PDLIM5-201ENST00000317968 ITGA6P23229 1130 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 CWC27Q6UX04 472 aaKnown RBP10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 NARFQ9UHQ1 456 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 SMC3Q9UQE7 1217 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 RFX7Q2KHR2 1363 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 IGKV5-2P06315 115 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 GNAT2P19087 354 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 GPR162Q16538 588 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 RNF41Q9H4P4 317 aaPredicted RBP10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 HELLSQ9NRZ9 838 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 LRP2BPQ9P2M1 347 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 EIF5P55010 431 aaKnown RBP10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 GSTO1P78417 241 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 PPP4R3BQ5MIZ7 849 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 OGFOD1Q8N543 542 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 HOOK1Q9UJC3 728 aaKnown RBP10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 ABCC12Q96J65 1359 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 ATP2B2Q01814 1243 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 AIDAQ96BJ3 306 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 RBM17Q96I25 401 aaKnown RBP10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 PARP4Q9UKK3 1724 aaKnown RBP10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 CHMLP26374 656 aa10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 PIP4K2AP48426 406 aaPredicted RBP10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 TRIM44Q96DX7 344 aaPredicted RBP10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 PA2G4Q9UQ80 394 aaKnown RBP10.13□□□□□ -0.79
PDLIM5-201ENST00000317968 TMEM132AQ24JP5 1023 aa10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 ZNF219Q9P2Y4 722 aaPredicted RBP10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 TFCP2Q12800 502 aa10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 MCMDC2Q4G0Z9 681 aa10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 DZIP1Q86YF9 867 aaKnown RBP10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 SIRT2Q8IXJ6 389 aa10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 NT5C2P49902 561 aa10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 PAG1Q9NWQ8 432 aa10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 CACNA1FO60840 1977 aa10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 NBPF26B4DH59 902 aa10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 PDE6BP35913 854 aa10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 PDIA6Q15084 440 aa10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 NBPF10Q6P3W6 841 aaKnown RBP10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 NBPF15Q8N660 670 aa10.12□□□□□ -0.79
PDLIM5-201ENST00000317968 SEMA3EO15041 775 aa10.11□□□□□ -0.79
PDLIM5-201ENST00000317968 DENND2AQ9ULE3 1009 aa10.11□□□□□ -0.79
PDLIM5-201ENST00000317968 KBTBD3Q8NAB2 608 aa10.11□□□□□ -0.79
PDLIM5-201ENST00000317968 HOOK2Q96ED9 719 aa10.11□□□□□ -0.79
PDLIM5-201ENST00000317968 A0A1B0GUL7 405 aa10.11□□□□□ -0.79
PDLIM5-201ENST00000317968 IDH1O75874 414 aaKnown RBP10.11□□□□□ -0.79
PDLIM5-201ENST00000317968 PRAMEF22A3QJZ6 481 aa10.11□□□□□ -0.79
PDLIM5-201ENST00000317968 NBR1Q14596 966 aa10.11□□□□□ -0.79
PDLIM5-201ENST00000317968 CCDC85AQ96PX6 553 aaPredicted RBP10.11□□□□□ -0.79
PDLIM5-201ENST00000317968 MRC1P22897 1456 aa10.11□□□□□ -0.79
PDLIM5-201ENST00000317968 RNF113AO15541 343 aaKnown RBP10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 CDKL5O76039 1030 aa10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 UBE4AQ14139 1066 aa10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 ROBO1Q9Y6N7 1651 aa10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 SSFA2P28290 1259 aa10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 EIF6P56537 245 aaKnown RBP10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 ZNF804AQ7Z570 1209 aa10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 GOLIM4O00461 696 aa10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 SOGA3Q5TF21 947 aa10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 PDRG1Q9NUG6 133 aa10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 BAG3O95817 575 aa10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 CCDC178Q5BJE1 867 aa10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 EHMT1Q9H9B1 1298 aa10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 USP5P45974 858 aa10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 SLC4A3P48751 1232 aa10.1□□□□□ -0.79
PDLIM5-201ENST00000317968 USP42Q9H9J4 1324 aaKnown RBP10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 SGSM2O43147 1006 aa10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 RPS8P62241 208 aaKnown RBP10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 TPD52L1Q16890 204 aaPredicted RBP10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 DNAI2Q9GZS0 605 aa10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 PHLPP1O60346 1717 aa10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 STRCQ7RTU9 1775 aa10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 HLA-DOAP06340 250 aa10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 PLCG2P16885 1265 aa10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 TNNI2P48788 182 aa10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 PRM3Q9NNZ6 103 aa10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 CABP5Q9NP86 173 aa10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 NHSL1Q5SYE7 1610 aa10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 WDR33Q9C0J8 1336 aaKnown RBP10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 POLR3DP05423 398 aaPredicted RBP10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 PLCB2Q00722 1185 aa10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 PTPN12Q05209 780 aaKnown RBP10.09□□□□□ -0.79
PDLIM5-201ENST00000317968 TM6SF1Q9BZW5 370 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms