RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 RAB11FIP4Q86YS3 637 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 ZNF396Q96N95 335 aaPredicted RBP12.33□□□□□ -0.44
COL3A1-202ENST00000317840 CLSTN2Q9H4D0 955 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.33□□□□□ -0.44
COL3A1-202ENST00000317840 EXOC5O00471 708 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 GCKRQ14397 625 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 STK38Q15208 465 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 MCMDC2Q4G0Z9 681 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 FSIP1Q8NA03 581 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 KCNF1Q9H3M0 494 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 NCOA5Q9HCD5 579 aaKnown RBP12.33□□□□□ -0.44
COL3A1-202ENST00000317840 IL2RBP14784 551 aa12.32□□□□□ -0.44
COL3A1-202ENST00000317840 ZNF75DP51815 510 aa12.32□□□□□ -0.44
COL3A1-202ENST00000317840 ST3GAL1Q11201 340 aa12.32□□□□□ -0.44
COL3A1-202ENST00000317840 LMBR1LQ6UX01 489 aa12.32□□□□□ -0.44
COL3A1-202ENST00000317840 C3P01024 1663 aa12.32□□□□□ -0.44
COL3A1-202ENST00000317840 U2AF2P26368 475 aaKnown RBP eCLIP12.32□□□□□ -0.44
COL3A1-202ENST00000317840 TNNI3KQ59H18 835 aa12.32□□□□□ -0.44
COL3A1-202ENST00000317840 KIF6Q6ZMV9 814 aa12.32□□□□□ -0.44
COL3A1-202ENST00000317840 CEP57L1Q8IYX8 460 aa12.32□□□□□ -0.44
COL3A1-202ENST00000317840 FTOQ9C0B1 505 aaKnown RBP eCLIP12.32□□□□□ -0.44
COL3A1-202ENST00000317840 ZSCAN16Q9H4T2 348 aaPredicted RBP12.32□□□□□ -0.44
COL3A1-202ENST00000317840 DBNLQ9UJU6 430 aaKnown RBP12.32□□□□□ -0.44
COL3A1-202ENST00000317840 FPGT-TNNI3KV9GXZ4 949 aa12.32□□□□□ -0.44
COL3A1-202ENST00000317840 NEURL1BA8MQ27 555 aa12.32□□□□□ -0.44
COL3A1-202ENST00000317840 HAND2P61296 217 aa12.32□□□□□ -0.44
COL3A1-202ENST00000317840 TOB2Q14106 344 aaPredicted RBP12.32□□□□□ -0.44
COL3A1-202ENST00000317840 GTF3C6Q969F1 213 aa12.32□□□□□ -0.44
COL3A1-202ENST00000317840 NAT10Q9H0A0 1025 aaKnown RBP12.32□□□□□ -0.44
COL3A1-202ENST00000317840 ERBB3P21860 1342 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 POLR3DP05423 398 aaPredicted RBP12.31□□□□□ -0.44
COL3A1-202ENST00000317840 EPHA10Q5JZY3 1008 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 SYNE3Q6ZMZ3 975 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 NGLY1Q96IV0 654 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 SLC52A2Q9HAB3 445 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 SNRKQ9NRH2 765 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.31□□□□□ -0.44
COL3A1-202ENST00000317840 V9GYY5 206 aaPredicted RBP12.31□□□□□ -0.44
COL3A1-202ENST00000317840 MON2Q7Z3U7 1717 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 TIMM10P62072 90 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 BRINP3Q76B58 766 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 ZNF771Q7L3S4 317 aaPredicted RBP12.31□□□□□ -0.44
COL3A1-202ENST00000317840 DCAF5Q96JK2 942 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 FUCA2Q9BTY2 467 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 TOMM22Q9NS69 142 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 PTPDC1A2A3K4 754 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 BIN1O00499 593 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 IGKV5-2P06315 115 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 TPM4P67936 248 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 PTPN14Q15678 1187 aa12.31□□□□□ -0.44
COL3A1-202ENST00000317840 ELP1O95163 1332 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 USP42Q9H9J4 1324 aaKnown RBP12.3□□□□□ -0.44
COL3A1-202ENST00000317840 SKILP12757 684 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 PHKG2P15735 406 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 STX1AQ16623 288 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 ZSCAN25Q6NSZ9 544 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 HOMER1Q86YM7 354 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 SPTLC3Q9NUV7 552 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 CYP21A2P08686 494 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 RALYLQ86SE5 291 aaKnown RBP12.3□□□□□ -0.44
COL3A1-202ENST00000317840 ANO10Q9NW15 660 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 PEAK1Q9H792 1746 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 APPP05067 770 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 SLFNL1Q499Z3 407 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 SMAP1Q8IYB5 467 aaPredicted RBP12.3□□□□□ -0.44
COL3A1-202ENST00000317840 IL17RAQ96F46 866 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 PGBD1Q96JS3 809 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 TBC1D2BQ9UPU7 963 aa12.3□□□□□ -0.44
COL3A1-202ENST00000317840 IFIT1P09914 478 aaKnown RBP12.29□□□□□ -0.44
COL3A1-202ENST00000317840 DHX32Q7L7V1 743 aaKnown RBP12.29□□□□□ -0.44
COL3A1-202ENST00000317840 METTL22Q9BUU2 404 aaPredicted RBP12.29□□□□□ -0.44
COL3A1-202ENST00000317840 CEMIPQ8WUJ3 1361 aa12.29□□□□□ -0.44
COL3A1-202ENST00000317840 PXDNLA1KZ92 1463 aa12.29□□□□□ -0.44
COL3A1-202ENST00000317840 HMGB1P09429 215 aaKnown RBP12.29□□□□□ -0.44
COL3A1-202ENST00000317840 CCDC57Q2TAC2 916 aa12.29□□□□□ -0.44
COL3A1-202ENST00000317840 CEP135Q66GS9 1140 aa12.29□□□□□ -0.44
COL3A1-202ENST00000317840 ISM2Q6H9L7 571 aa12.29□□□□□ -0.44
COL3A1-202ENST00000317840 AEBP2Q6ZN18 517 aaPredicted RBP12.29□□□□□ -0.44
COL3A1-202ENST00000317840 STK11IPQ8N1F8 1099 aa12.29□□□□□ -0.44
COL3A1-202ENST00000317840 KAZALD1Q96I82 304 aa12.29□□□□□ -0.44
COL3A1-202ENST00000317840 SCRN1Q12765 414 aa12.29□□□□□ -0.44
COL3A1-202ENST00000317840 AOPEPQ8N6M6 819 aa12.29□□□□□ -0.44
COL3A1-202ENST00000317840 CACTINQ8WUQ7 758 aaKnown RBP12.29□□□□□ -0.44
COL3A1-202ENST00000317840 CTAGE5O15320 804 aa12.28□□□□□ -0.44
COL3A1-202ENST00000317840 ATP5JP18859 108 aa12.28□□□□□ -0.44
COL3A1-202ENST00000317840 OTUD7BQ6GQQ9 843 aa12.28□□□□□ -0.44
COL3A1-202ENST00000317840 CNNM1Q9NRU3 951 aa12.28□□□□□ -0.44
COL3A1-202ENST00000317840 USP28Q96RU2 1077 aa12.28□□□□□ -0.44
COL3A1-202ENST00000317840 ADGRL3Q9HAR2 1447 aa12.28□□□□□ -0.44
COL3A1-202ENST00000317840 UBAP1LF5GYI3 381 aa12.28□□□□□ -0.44
COL3A1-202ENST00000317840 STARD3NLO95772 234 aa12.28□□□□□ -0.44
COL3A1-202ENST00000317840 ZNF710Q8N1W2 664 aa12.28□□□□□ -0.44
COL3A1-202ENST00000317840 NRXN3Q9Y4C0 1643 aa12.28□□□□□ -0.44
COL3A1-202ENST00000317840 A0A1B0GVL5 298 aa12.27□□□□□ -0.44
COL3A1-202ENST00000317840 CAVIN2O95810 425 aa12.27□□□□□ -0.44
COL3A1-202ENST00000317840 C8orf37Q96NL8 207 aa12.27□□□□□ -0.44
COL3A1-202ENST00000317840 PAG1Q9NWQ8 432 aa12.27□□□□□ -0.44
COL3A1-202ENST00000317840 CCDC69A6NI79 296 aa12.27□□□□□ -0.45
COL3A1-202ENST00000317840 CYP27B1O15528 508 aa12.27□□□□□ -0.45
COL3A1-202ENST00000317840 ARID5BQ14865 1188 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms