RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SCLT1Q96NL6 688 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 NFXL1Q6ZNB6 911 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 BRAPQ7Z569 592 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 BPIFA3Q9BQP9 254 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 TAF7Q15545 349 aaPredicted RBP7.35□□□□□ -1.23
VPS35-201ENST00000299138 LUZP1Q86V48 1076 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 PPFIBP1Q86W92 1011 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 RNF168Q8IYW5 571 aaPredicted RBP7.35□□□□□ -1.23
VPS35-201ENST00000299138 TMX1Q9H3N1 280 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 RSPH14Q9UHP6 348 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 BANK1Q8NDB2 785 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 CAPN15O75808 1086 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 TACO1Q9BSH4 297 aaKnown RBP7.35□□□□□ -1.23
VPS35-201ENST00000299138 UPF3BQ9BZI7 483 aaKnown RBP7.35□□□□□ -1.23
VPS35-201ENST00000299138 SNRKQ9NRH2 765 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 NUTM2FA1L443 756 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 IFFO1Q0D2I5 559 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 KANK3Q6NY19 840 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 NUDT16Q96DE0 195 aaKnown RBP7.35□□□□□ -1.23
VPS35-201ENST00000299138 ZSWIM6Q9HCJ5 1215 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 NCAPD2Q15021 1401 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 BMP15O95972 392 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 ERCC3P19447 782 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 SAMD1Q6SPF0 538 aaPredicted RBP7.35□□□□□ -1.23
VPS35-201ENST00000299138 RPUSD2Q8IZ73 545 aaKnown RBP7.35□□□□□ -1.23
VPS35-201ENST00000299138 IQCDQ96DY2 449 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 WDR70Q9NW82 654 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 MKRN1Q9UHC7 482 aaKnown RBP7.35□□□□□ -1.23
VPS35-201ENST00000299138 NOL3O60936 208 aaKnown RBP7.35□□□□□ -1.23
VPS35-201ENST00000299138 YEATS4O95619 227 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 FAM160A1Q05DH4 1040 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 SEMA3FQ13275 785 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 WASF1Q92558 559 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 RPGRIP1Q96KN7 1286 aa7.35□□□□□ -1.23
VPS35-201ENST00000299138 PIK3C2BO00750 1634 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 CLTCQ00610 1675 aaKnown RBP7.34□□□□□ -1.23
VPS35-201ENST00000299138 GNAT3A8MTJ3 354 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 TXLNAP40222 546 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 AMPHP49418 695 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 GBP6Q6ZN66 633 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 C10orf67Q8IYJ2 551 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 EFCC1Q9HA90 598 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 DNAI1Q9UI46 699 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 TNRQ92752 1358 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 CEBPZQ03701 1054 aaKnown RBP7.34□□□□□ -1.23
VPS35-201ENST00000299138 MAP9Q49MG5 647 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 RPAINQ86UA6 219 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 SIRT2Q8IXJ6 389 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 GBP7Q8N8V2 638 aaPredicted RBP7.34□□□□□ -1.23
VPS35-201ENST00000299138 SEPT8Q92599 483 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 TNNQ9UQP3 1299 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 PTPRMP28827 1452 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 ZFYP08048 801 aaPredicted RBP7.34□□□□□ -1.23
VPS35-201ENST00000299138 C6orf163Q5TEZ5 329 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 ELOA2Q8IYF1 753 aaPredicted RBP7.34□□□□□ -1.23
VPS35-201ENST00000299138 C8orf58Q8NAV2 365 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 DRC1Q96MC2 740 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 ZDHHC9Q9Y397 364 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 SULT6B1Q6IMI4 303 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 HYPKQ9NX55 129 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 DBF4Q9UBU7 674 aaPredicted RBP7.34□□□□□ -1.23
VPS35-201ENST00000299138 CTDP1Q9Y5B0 961 aaPredicted RBP7.34□□□□□ -1.23
VPS35-201ENST00000299138 IFT172Q9UG01 1749 aa7.34□□□□□ -1.23
VPS35-201ENST00000299138 PHLPP2Q6ZVD8 1323 aa7.34□□□□□ -1.24
VPS35-201ENST00000299138 SALL3Q9BXA9 1300 aa7.34□□□□□ -1.24
VPS35-201ENST00000299138 IKBKBO14920 756 aa7.34□□□□□ -1.24
VPS35-201ENST00000299138 SPAG1Q07617 926 aa7.34□□□□□ -1.24
VPS35-201ENST00000299138 BRD3Q15059 726 aa7.34□□□□□ -1.24
VPS35-201ENST00000299138 ZGPATQ8N5A5 531 aaKnown RBP7.34□□□□□ -1.24
VPS35-201ENST00000299138 SMARCC1Q92922 1105 aaPredicted RBP7.34□□□□□ -1.24
VPS35-201ENST00000299138 OSBPL5Q9H0X9 879 aaPredicted RBP7.34□□□□□ -1.24
VPS35-201ENST00000299138 NEBLO76041 1014 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 ZSCAN20P17040 1043 aaPredicted RBP7.33□□□□□ -1.24
VPS35-201ENST00000299138 HDGFL1Q5TGJ6 251 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 EHBP1Q8NDI1 1231 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 RBM42Q9BTD8 480 aaKnown RBP7.33□□□□□ -1.24
VPS35-201ENST00000299138 NAA15Q9BXJ9 866 aaKnown RBP7.33□□□□□ -1.24
VPS35-201ENST00000299138 KDRP35968 1356 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 GJB2P29033 226 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 POLA2Q14181 598 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 MUM1L1Q5H9M0 696 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 DDX46Q7L014 1031 aaKnown RBP7.33□□□□□ -1.24
VPS35-201ENST00000299138 RUFY3Q7L099 469 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 JAKMIP1Q96N16 626 aaKnown RBP7.33□□□□□ -1.24
VPS35-201ENST00000299138 PRDM4Q9UKN5 801 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 MTMR6Q9Y217 621 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 POLD1P28340 1107 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 SNW1Q13573 536 aaKnown RBP7.33□□□□□ -1.24
VPS35-201ENST00000299138 MSL1Q68DK7 614 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 CCDC186Q7Z3E2 898 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 PIK3R5Q8WYR1 880 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 SEPT10Q9P0V9 454 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 TEFQ10587 303 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 PLEKHO1Q53GL0 409 aaPredicted RBP7.33□□□□□ -1.24
VPS35-201ENST00000299138 SPATS2Q86XZ4 545 aaKnown RBP7.33□□□□□ -1.24
VPS35-201ENST00000299138 LRRC43Q8N309 656 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 CTCFLQ8NI51 663 aaPredicted RBP7.33□□□□□ -1.24
VPS35-201ENST00000299138 PSD3Q9NYI0 1048 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 OVOS2A0A0G2JMS6 1433 aa7.33□□□□□ -1.24
VPS35-201ENST00000299138 ANKRD18BA2A2Z9 1011 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms