RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 WASHC4Q2M389 1173 aa14.88□□□□□ -0.03
LIG1-201ENST00000263274 CCAR1Q8IX12 1150 aaKnown RBP14.88□□□□□ -0.03
LIG1-201ENST00000263274 PGBD1Q96JS3 809 aa14.88□□□□□ -0.03
LIG1-201ENST00000263274 TNNT1P13805 278 aa14.87□□□□□ -0.03
LIG1-201ENST00000263274 ARHGEF25Q86VW2 580 aa14.87□□□□□ -0.03
LIG1-201ENST00000263274 PXDNLA1KZ92 1463 aa14.87□□□□□ -0.03
LIG1-201ENST00000263274 KINO60870 393 aaKnown RBP14.87□□□□□ -0.03
LIG1-201ENST00000263274 HSP90AB3PQ58FF7 597 aa14.87□□□□□ -0.03
LIG1-201ENST00000263274 OTUD7BQ6GQQ9 843 aa14.87□□□□□ -0.03
LIG1-201ENST00000263274 PROSER2Q86WR7 435 aaPredicted RBP14.87□□□□□ -0.03
LIG1-201ENST00000263274 IL17RAQ96F46 866 aa14.87□□□□□ -0.03
LIG1-201ENST00000263274 HMG20BQ9P0W2 317 aa14.87□□□□□ -0.03
LIG1-201ENST00000263274 CFAP45Q9UL16 551 aa14.87□□□□□ -0.03
LIG1-201ENST00000263274 MCMDC2Q4G0Z9 681 aa14.87□□□□□ -0.03
LIG1-201ENST00000263274 RGPD1P0DJD0 1748 aa14.86□□□□□ -0.03
LIG1-201ENST00000263274 ZNF594Q96JF6 807 aaPredicted RBP14.86□□□□□ -0.03
LIG1-201ENST00000263274 METTL22Q9BUU2 404 aaPredicted RBP14.86□□□□□ -0.03
LIG1-201ENST00000263274 ZBTB3Q9H5J0 574 aa14.86□□□□□ -0.03
LIG1-201ENST00000263274 POLR3DP05423 398 aaPredicted RBP14.86□□□□□ -0.03
LIG1-201ENST00000263274 CABP4P57796 275 aa14.86□□□□□ -0.03
LIG1-201ENST00000263274 GTF3C6Q969F1 213 aa14.86□□□□□ -0.03
LIG1-201ENST00000263274 CLSTN2Q9H4D0 955 aa14.86□□□□□ -0.03
LIG1-201ENST00000263274 U3KPZ7 1027 aaPredicted RBP14.86□□□□□ -0.03
LIG1-201ENST00000263274 ISM2Q6H9L7 571 aa14.85□□□□□ -0.03
LIG1-201ENST00000263274 A0A0G2JLW4 131 aa14.85□□□□□ -0.03
LIG1-201ENST00000263274 SCRN1Q12765 414 aa14.85□□□□□ -0.03
LIG1-201ENST00000263274 ARID5BQ14865 1188 aa14.85□□□□□ -0.03
LIG1-201ENST00000263274 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.85□□□□□ -0.03
LIG1-201ENST00000263274 V9GYY5 206 aaPredicted RBP14.85□□□□□ -0.03
LIG1-201ENST00000263274 BIN1O00499 593 aa14.85□□□□□ -0.03
LIG1-201ENST00000263274 ZNF75DP51815 510 aa14.85□□□□□ -0.03
LIG1-201ENST00000263274 PTPN12Q05209 780 aaKnown RBP14.85□□□□□ -0.03
LIG1-201ENST00000263274 CCDC94Q9BW85 323 aaPredicted RBP14.85□□□□□ -0.03
LIG1-201ENST00000263274 UBR1Q8IWV7 1749 aa14.85□□□□□ -0.03
LIG1-201ENST00000263274 XRN1Q8IZH2 1706 aaKnown RBP14.85□□□□□ -0.03
LIG1-201ENST00000263274 PTPDC1A2A3K4 754 aa14.84□□□□□ -0.03
LIG1-201ENST00000263274 PDIA6Q15084 440 aa14.84□□□□□ -0.03
LIG1-201ENST00000263274 ZNF710Q8N1W2 664 aa14.84□□□□□ -0.03
LIG1-201ENST00000263274 FSIP1Q8NA03 581 aa14.84□□□□□ -0.03
LIG1-201ENST00000263274 PIK3C2AO00443 1686 aa14.84□□□□□ -0.03
LIG1-201ENST00000263274 U2AF2P26368 475 aaKnown RBP eCLIP14.84□□□□□ -0.03
LIG1-201ENST00000263274 TTLL5Q6EMB2 1281 aa14.84□□□□□ -0.03
LIG1-201ENST00000263274 SNRPA1P09661 255 aaKnown RBP14.84□□□□□ -0.03
LIG1-201ENST00000263274 ATP5JP18859 108 aa14.84□□□□□ -0.03
LIG1-201ENST00000263274 NAA30Q147X3 362 aaPredicted RBP14.84□□□□□ -0.03
LIG1-201ENST00000263274 ZNF335Q9H4Z2 1342 aaPredicted RBP14.84□□□□□ -0.03
LIG1-201ENST00000263274 SLC52A2Q9HAB3 445 aa14.84□□□□□ -0.03
LIG1-201ENST00000263274 PXDNQ92626 1479 aa14.83□□□□□ -0.04
LIG1-201ENST00000263274 IFIT1P09914 478 aaKnown RBP14.83□□□□□ -0.04
LIG1-201ENST00000263274 SYTL4Q96C24 671 aaPredicted RBP14.83□□□□□ -0.04
LIG1-201ENST00000263274 USP28Q96RU2 1077 aa14.83□□□□□ -0.04
LIG1-201ENST00000263274 ZSCAN25Q6NSZ9 544 aa14.82□□□□□ -0.04
LIG1-201ENST00000263274 C11orf57Q6ZUT1 292 aaPredicted RBP14.82□□□□□ -0.04
LIG1-201ENST00000263274 CCDC112Q8NEF3 446 aa14.82□□□□□ -0.04
LIG1-201ENST00000263274 CACTINQ8WUQ7 758 aaKnown RBP14.82□□□□□ -0.04
LIG1-201ENST00000263274 GPHNQ9NQX3 736 aaPredicted RBP14.82□□□□□ -0.04
LIG1-201ENST00000263274 FAM208AQ9UK61 1670 aaKnown RBP14.82□□□□□ -0.04
LIG1-201ENST00000263274 FMN2Q9NZ56 1722 aa14.82□□□□□ -0.04
LIG1-201ENST00000263274 CPLX1O14810 134 aa14.82□□□□□ -0.04
LIG1-201ENST00000263274 STK38Q15208 465 aa14.82□□□□□ -0.04
LIG1-201ENST00000263274 STK11IPQ8N1F8 1099 aa14.82□□□□□ -0.04
LIG1-201ENST00000263274 SPTLC3Q9NUV7 552 aa14.82□□□□□ -0.04
LIG1-201ENST00000263274 PAG1Q9NWQ8 432 aa14.82□□□□□ -0.04
LIG1-201ENST00000263274 A0A0G2JS52 829 aa14.82□□□□□ -0.04
LIG1-201ENST00000263274 A0A1B0GVL5 298 aa14.82□□□□□ -0.04
LIG1-201ENST00000263274 DHX32Q7L7V1 743 aaKnown RBP14.82□□□□□ -0.04
LIG1-201ENST00000263274 KCNB2Q92953 911 aa14.82□□□□□ -0.04
LIG1-201ENST00000263274 SMC2O95347 1197 aa14.81□□□□□ -0.04
LIG1-201ENST00000263274 RESTQ13127 1097 aa14.81□□□□□ -0.04
LIG1-201ENST00000263274 STOX1Q6ZVD7 989 aa14.81□□□□□ -0.04
LIG1-201ENST00000263274 IFNL2Q8IZJ0 200 aa14.81□□□□□ -0.04
LIG1-201ENST00000263274 ELP1O95163 1332 aa14.81□□□□□ -0.04
LIG1-201ENST00000263274 DMTNQ08495 405 aa14.81□□□□□ -0.04
LIG1-201ENST00000263274 GNL2Q13823 731 aaKnown RBP14.81□□□□□ -0.04
LIG1-201ENST00000263274 CCDC144BQ3MJ40 725 aa14.81□□□□□ -0.04
LIG1-201ENST00000263274 CCDC144CPQ8IYA2 1237 aa14.81□□□□□ -0.04
LIG1-201ENST00000263274 AOPEPQ8N6M6 819 aa14.81□□□□□ -0.04
LIG1-201ENST00000263274 ZSCAN16Q9H4T2 348 aaPredicted RBP14.81□□□□□ -0.04
LIG1-201ENST00000263274 APPP05067 770 aa14.81□□□□□ -0.04
LIG1-201ENST00000263274 MAPK8IP2Q13387 824 aaPredicted RBP14.81□□□□□ -0.04
LIG1-201ENST00000263274 COPRSQ9NQ92 184 aa14.81□□□□□ -0.04
LIG1-201ENST00000263274 NWD1Q149M9 1564 aa14.8□□□□□ -0.04
LIG1-201ENST00000263274 LRRC24Q50LG9 513 aa14.8□□□□□ -0.04
LIG1-201ENST00000263274 ZNF396Q96N95 335 aaPredicted RBP14.8□□□□□ -0.04
LIG1-201ENST00000263274 GJB4Q9NTQ9 266 aa14.8□□□□□ -0.04
LIG1-201ENST00000263274 ANKARQ7Z5J8 1434 aa14.8□□□□□ -0.04
LIG1-201ENST00000263274 ADAMTSL3P82987 1691 aa14.8□□□□□ -0.04
LIG1-201ENST00000263274 ATP2B3Q16720 1220 aa14.8□□□□□ -0.04
LIG1-201ENST00000263274 PLCD3Q8N3E9 789 aa14.8□□□□□ -0.04
LIG1-201ENST00000263274 KBTBD3Q8NAB2 608 aa14.8□□□□□ -0.04
LIG1-201ENST00000263274 A1BGP04217 495 aa14.79□□□□□ -0.04
LIG1-201ENST00000263274 SKILP12757 684 aa14.79□□□□□ -0.04
LIG1-201ENST00000263274 TTLL7Q6ZT98 887 aa14.79□□□□□ -0.04
LIG1-201ENST00000263274 NALCNQ8IZF0 1738 aa14.79□□□□□ -0.04
LIG1-201ENST00000263274 PHKG2P15735 406 aa14.79□□□□□ -0.04
LIG1-201ENST00000263274 VGLL3A8MV65 326 aa14.79□□□□□ -0.04
LIG1-201ENST00000263274 SYNE3Q6ZMZ3 975 aa14.79□□□□□ -0.04
LIG1-201ENST00000263274 NSUN7Q8NE18 718 aaKnown RBP14.79□□□□□ -0.04
LIG1-201ENST00000263274 MED23Q9ULK4 1368 aa14.78□□□□□ -0.04
LIG1-201ENST00000263274 BRD2P25440 801 aaKnown RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms