RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 ZYG11AQ6WRX3 759 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 HDDC2Q7Z4H3 204 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 OAFQ86UD1 273 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 RIMKLAQ8IXN7 391 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 LYPD1Q8N2G4 141 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 LKAAEAR1Q8TD35 194 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 FAM3DQ96BQ1 224 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 KANK1Q14678 1352 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 GPATCH8Q9UKJ3 1502 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 IGHV5-10-1A0A0J9YXX1 117 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 A0A0U1RQS6 177 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 ARHGEF35A5YM69 484 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 TRIM64CA6NLI5 447 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 F6UB75 175 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 PPP1R2P9O14990 202 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 RAB3DO95716 219 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 SERPINA3P01011 423 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 CD5P06127 495 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 BCHEP06276 602 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 TCN2P20062 427 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 IFNA8P32881 189 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 CEACAM6P40199 344 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 ESRRGP62508 458 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 KCNJ2P63252 427 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 SYCNQ0VAF6 134 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 CLINT1Q14677 625 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 ZSCAN26Q16670 478 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 Q5W150 140 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 DUX4L9Q6RFH8 374 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 HMGN2P46Q86SG4 172 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 ARRDC1Q8N5I2 433 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 RNF139Q8WU17 664 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 CREB3L1Q96BA8 519 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 TM4SF18Q96CE8 201 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 PIK3IP1Q96FE7 263 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 CNDP1Q96KN2 507 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 MYCBPQ99417 103 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 ZNF2Q9BSG1 426 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 GCOM2Q9BZD3 368 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 ING2Q9H160 280 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 C12orf10Q9HB07 376 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 COX16Q9P0S2 106 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 ZNRD1Q9P1U0 126 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 CTNNA3Q9UI47 895 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 IKZF2Q9UKS7 526 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 RABL2BQ9UNT1 228 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 RRP15Q9Y3B9 282 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 TMEM14AQ9Y6G1 99 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 PLA2R1Q13018 1463 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 KIF26AQ9ULI4 1882 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 COL1A2P08123 1366 aa2.49□□□□□ -2.01
SMCHD1-204ENST00000581226 IGKV1D-17A0A075B6S4 117 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 TRAV40A0A0B4J280 105 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 FAM240BA0A1B0GVZ2 78 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 XKRY2A2RUG3 117 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 C7orf66A4D0T2 115 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 MPHOSPH10O00566 681 aaKnown RBP2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 SRP72O76094 671 aaKnown RBP2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 FGGP02679 453 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 HLA-DPB1P04440 258 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 IGHV1-8P0DP01 117 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 MX1P20591 662 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 KITLGP21583 273 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 TPMTP51580 245 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 RPL23AP62750 156 aaKnown RBP2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 ARG2P78540 354 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 ECH1Q13011 328 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 ZMYND11Q15326 602 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 CTSL3PQ5NE16 218 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 DNAJC24Q6P3W2 148 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 ZNF880Q6PDB4 577 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 TEX43Q6ZNM6 134 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 EGFL6Q8IUX8 553 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 SLC22A9Q8IVM8 553 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 OR2L3Q8NG85 312 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 ZNF461Q8TAF7 563 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 CXorf40AQ8TE69 158 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 N4BP2L2Q92802 583 aaPredicted RBP2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 FBXO32Q969P5 355 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 TUBGCP3Q96CW5 907 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 RBMXL1Q96E39 390 aaKnown RBP2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 SLC25A2Q9BXI2 301 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 HMG20AQ9NP66 347 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 PISDQ9UG56 409 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 SUN2Q9UH99 717 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 GGA2Q9UJY4 613 aa2.48□□□□□ -2.01
SMCHD1-204ENST00000581226 RBFOX2O43251 390 aaKnown RBP eCLIP2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 AIFM1O95831 613 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 IGKV1-17P01599 117 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 IGLV3-19P01714 112 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 ZNF14P17017 642 aaPredicted RBP2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 MAS1LP35410 378 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 GPX6P59796 221 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 MRPS22P82650 360 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 MAB21L1Q13394 359 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 TGFBIQ15582 683 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 COX19Q49B96 90 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 ZNF684Q5T5D7 378 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 CCNJQ5T5M9 372 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 ANKRD22Q5VYY1 191 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms