RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	LCLAT1	Q6UWP7	414 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440		Q6ZSV7	163 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ACOT7L	Q6ZUV0	252 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	WDFY1	Q8IWB7	410 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	PRSS58	Q8IYP2	241 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	DND1	Q8IYX4	353 aa	Known RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	OR5B3	Q8NH48	314 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	SLC7A13	Q8TCU3	470 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	NEK7	Q8TDX7	302 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	HPSE2	Q8WWQ2	592 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	DDB2	Q92466	427 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	FLYWCH2	Q96CP2	140 aa	Known RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	STAC	Q99469	402 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	REEP4	Q9H6H4	257 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ZNF334	Q9HCZ1	680 aa	Predicted RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	C12orf4	Q9NQ89	552 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	DIABLO	Q9NR28	239 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	FGFR1OP2	Q9NVK5	253 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	CLN6	Q9NWW5	311 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	TMCO1	Q9UM00	188 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	3.55	□□□□□ -1.84
USP44-208	ENST00000552440	ARHGEF12	Q9NZN5	1544 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	DENND4B	O75064	1496 aa	Predicted RBP	3.55	□□□□□ -1.84
USP44-208	ENST00000552440	ZNF521	Q96K83	1311 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	TRAV8-7	A0A075B6U6	113 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	OR5H15	A6NDH6	313 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	OR5B21	A6NL26	309 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	IDS	B3KWA1	339 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	SEC14L6	B5MCN3	397 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440		C9J4A7	227 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	SIGLEC5	O15389	551 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	XPNPEP2	O43895	674 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	HPGDS	O60760	199 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	ALOX12B	O75342	701 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	CLDN11	O75508	207 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	TRAPPC6A	O75865	159 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	SRP72	O76094	671 aa	Known RBP	3.55	□□□□□ -1.84
USP44-208	ENST00000552440	MPZL1	O95297	269 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	TDP2	O95551	362 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	HBE1	P02100	147 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	RNH1	P13489	461 aa	Known RBP	3.55	□□□□□ -1.84
USP44-208	ENST00000552440	COX5A	P20674	150 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	SAA4	P35542	130 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	RFC3	P40938	356 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	LBX1	P52954	281 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	CDH11	P55287	796 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	ZNF33B	Q06732	778 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	ARL16	Q0P5N6	197 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	MLLT11	Q13015	90 aa	Predicted RBP	3.55	□□□□□ -1.84
USP44-208	ENST00000552440	FLOT2	Q14254	428 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	SLC9A3R2	Q15599	337 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	ANKRD26P1	Q6NSI1	321 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	CALHM1	Q8IU99	346 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	FAM71A	Q8IYT1	594 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	CCDC54	Q8NEL0	328 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	OR2D3	Q8NGH3	330 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	APH1B	Q8WW43	257 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	GTF3A	Q92664	365 aa	Known RBP	3.55	□□□□□ -1.84
USP44-208	ENST00000552440	RAB3C	Q96E17	227 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	CABLES2	Q9BTV7	478 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	MRPS26	Q9BYN8	205 aa	Known RBP	3.55	□□□□□ -1.84
USP44-208	ENST00000552440	C6orf50	Q9HD87	102 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	IFT46	Q9NQC8	304 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	INTS9	Q9NV88	658 aa	Known RBP	3.55	□□□□□ -1.84
USP44-208	ENST00000552440	TMEM30A	Q9NV96	361 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	GID8	Q9NWU2	228 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	SDHAF2	Q9NX18	166 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	SLC25A37	Q9NYZ2	338 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	MTCH2	Q9Y6C9	303 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	USH1C	Q9Y6N9	552 aa		3.55	□□□□□ -1.84
USP44-208	ENST00000552440	ZMYM2	Q9UBW7	1377 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	NEDD4	P46934	1319 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	3.54	□□□□□ -1.84
USP44-208	ENST00000552440	IGHV4-28	A0A0C4DH34	117 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440		A0A1B0GTH9	108 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	ANKRD20A5P	A0PJZ0	165 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	RNF212B	A8MTL3	300 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	TCP10L2	B9ZVM9	353 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	FGF16	O43320	207 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	SOX15	O60248	233 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	BCAR3	O75815	825 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	OXT	P01178	125 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	HLA-A	P01891	365 aa	Known RBP	3.54	□□□□□ -1.84
USP44-208	ENST00000552440	APOE	P02649	317 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	HIST1H1C	P16403	213 aa	Known RBP	3.54	□□□□□ -1.84
USP44-208	ENST00000552440	ITGA2	P17301	1181 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	EFNA1	P20827	205 aa	Predicted RBP	3.54	□□□□□ -1.84
USP44-208	ENST00000552440	FGF9	P31371	208 aa	Predicted RBP	3.54	□□□□□ -1.84
USP44-208	ENST00000552440	CAV2	P51636	162 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	FBXW4	P57775	412 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	TAS2R60	P59551	318 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	ABCE1	P61221	599 aa	Known RBP	3.54	□□□□□ -1.84
USP44-208	ENST00000552440	ILF3	Q12906	894 aa	Known RBP eCLIP	3.54	□□□□□ -1.84
USP44-208	ENST00000552440	ELAVL2	Q12926	359 aa	Known RBP	3.54	□□□□□ -1.84
USP44-208	ENST00000552440	ASAH1	Q13510	395 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	OR5I1	Q13606	314 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	RAB31	Q13636	194 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	ACSM3	Q53FZ2	586 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	CARD16	Q5EG05	197 aa		3.54	□□□□□ -1.84
USP44-208	ENST00000552440	VWA2	Q5GFL6	755 aa		3.54	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms