RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 CLDND2Q8NHS1 167 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 PSMA8Q8TAA3 256 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 FAM110DQ8TAY7 271 aaPredicted RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 FBXO25Q8TCJ0 367 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 MAGEE2Q8TD90 523 aaPredicted RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 ST8SIA1Q92185 356 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 CNOT9Q92600 299 aaKnown RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 BCL2L2Q92843 193 aaPredicted RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 CIDECQ96AQ7 238 aaPredicted RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 TMEM186Q96B77 213 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 LRRC58Q96CX6 371 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 FAM120BQ96EK7 910 aaKnown RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 MED30Q96HR3 178 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 METTL2AQ96IZ6 378 aaKnown RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 ARL5BQ96KC2 179 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 TMEM237Q96Q45 408 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 SLC38A2Q96QD8 506 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 OR5B2Q96R09 309 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 KCNA7Q96RP8 456 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 STACQ99469 402 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 SDF2Q99470 211 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 THUMPD3Q9BV44 507 aaKnown RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 IFT27Q9BW83 186 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 CCDC106Q9BWC9 280 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 LAT2Q9GZY6 243 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 RAB1BQ9H0U4 201 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 DPH5Q9H2P9 285 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 PIGUQ9H490 435 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 ZNF442Q9H7R0 627 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 EQTNQ9NQ60 294 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 MIEF1Q9NQG6 463 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 SIRT3Q9NTG7 399 aaPredicted RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 ACSS1Q9NUB1 689 aaPredicted RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 ACER3Q9NUN7 267 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 HIF1ANQ9NWT6 349 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 EMC3Q9P0I2 261 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 UPB1Q9UBR1 384 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 TRAPPC4Q9Y296 219 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 HDGFL3Q9Y3E1 203 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 TIMM22Q9Y584 194 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 FLVCR1Q9Y5Y0 555 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 UBR4Q5T4S7 5183 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 FRAS1Q86XX4 4008 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 ARPC4-TTLL3A0A0A6YYG9 625 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 TEX13CA0A0J9YWL9 993 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 SLC22A23A1A5C7 686 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 DPPA5A6NC42 116 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 FAM90A7PA6NKC0 464 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 FAM90A22PA8MWA6 464 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 FAM90A12PA8MX19 464 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 FAM90A23PA8MXZ1 464 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 H3BNH8 94 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 SULT2B1O00204 365 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 KLF11O14901 512 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 PIN1P1O15428 100 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 ZNF264O43296 627 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 BCAS1O75363 584 aaPredicted RBP3.01□□□□□ -1.93
LIMA1-206ENST00000550611 RSL1D1O76021 490 aaKnown RBP3.01□□□□□ -1.93
LIMA1-206ENST00000550611 NUDT14O95848 222 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 IL1AP01583 271 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 IGKV3-15P01624 115 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 TFP02787 698 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 HMGN2P05204 90 aaKnown RBP3.01□□□□□ -1.93
LIMA1-206ENST00000550611 GUSBP08236 651 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 CECR9P0C854 216 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 COL8A2P25067 703 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 FKBP2P26885 142 aaKnown RBP3.01□□□□□ -1.93
LIMA1-206ENST00000550611 HMOX2P30519 316 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 APOBEC1P41238 236 aaKnown RBP3.01□□□□□ -1.93
LIMA1-206ENST00000550611 SOX2P48431 317 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 EVX1P49640 407 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 SH3BGRP55822 239 aaPredicted RBP3.01□□□□□ -1.93
LIMA1-206ENST00000550611 TMEM33P57088 247 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 UBA52P62987 128 aaKnown RBP3.01□□□□□ -1.93
LIMA1-206ENST00000550611 MRPS11P82912 194 aaKnown RBP3.01□□□□□ -1.93
LIMA1-206ENST00000550611 CAV1Q03135 178 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 TGFBR3Q03167 851 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 MERTKQ12866 999 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 LCP2Q13094 533 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 SCGB2A2Q13296 93 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 SKP2Q13309 424 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 LASP1Q14847 261 aaKnown RBP3.01□□□□□ -1.93
LIMA1-206ENST00000550611 ZNF141Q15928 474 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 BAK1Q16611 211 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 SLC9B1Q4ZJI4 515 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 HIKESHIQ53FT3 197 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 CCDC92Q53HC0 331 aaPredicted RBP3.01□□□□□ -1.93
LIMA1-206ENST00000550611 DCST2Q5T1A1 773 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 C9orf135Q5VTT2 229 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 ANKRD26P1Q6NSI1 321 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 CDC73Q6P1J9 531 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 C16orf87Q6PH81 154 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 TIFABQ6ZNK6 161 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 H1FNTQ75WM6 255 aaPredicted RBP3.01□□□□□ -1.93
LIMA1-206ENST00000550611 LINGO2Q7L985 606 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 SLC46A3Q7Z3Q1 461 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 SPATA19Q7Z5L4 167 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 SVOPLQ8N434 492 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 SCAIQ8N9R8 606 aa3.01□□□□□ -1.93
LIMA1-206ENST00000550611 SYT14Q8NB59 555 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms