RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 VAMP5O95183 116 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 C1orf105O95561 183 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 IGKV2D-28P01615 120 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 FTH1P02794 183 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 IGHV3-43DP0DP04 118 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 CCNB1P14635 433 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 RAB3BP20337 219 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 GTF2E2P29084 291 aaKnown RBP1.75□□□□□ -2.13
CD44-238ENST00000534296 CEACAM6P40199 344 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 SLC1A1P43005 524 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 SYKP43405 635 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 RPS9P46781 194 aaKnown RBP1.75□□□□□ -2.13
CD44-238ENST00000534296 TMED10P49755 219 aaKnown RBP1.75□□□□□ -2.13
CD44-238ENST00000534296 PPOXP50336 477 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 CDH6P55285 790 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 GPX6P59796 221 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 EIF3EP60228 445 aaKnown RBP1.75□□□□□ -2.13
CD44-238ENST00000534296 PFN3P60673 137 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 REG3AQ06141 175 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 IDI1Q13907 227 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 EBI3Q14213 229 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 PTGES3Q15185 160 aaKnown RBP1.75□□□□□ -2.13
CD44-238ENST00000534296 PSMD5Q16401 504 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 GUCA2BQ16661 112 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 PTPN20Q4JDL3 420 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 HSP90AB3PQ58FF7 597 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 SPANXN2Q5MJ10 180 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 ANKRD22Q5VYY1 191 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 FAM71E1Q6IPT2 247 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 ZYG11AQ6WRX3 759 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 ZNF836Q6ZNA1 936 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 KRTAP5-5Q701N2 237 aaPredicted RBP1.75□□□□□ -2.13
CD44-238ENST00000534296 SLC16A14Q7RTX9 510 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 HDDC2Q7Z4H3 204 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 CDR2LQ86X02 465 aaPredicted RBP1.75□□□□□ -2.13
CD44-238ENST00000534296 TTC5Q8N0Z6 440 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 BBS5Q8N3I7 341 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 ZNF433Q8N7K0 673 aaPredicted RBP1.75□□□□□ -2.13
CD44-238ENST00000534296 BBOF1Q8ND07 529 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 OR2L3Q8NG85 312 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 OR10G4Q8NGN3 311 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 OR5B3Q8NH48 314 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 OR4S2Q8NH73 311 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 SYNPRQ8TBG9 265 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 LKAAEAR1Q8TD35 194 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 SRSF12Q8WXF0 261 aaKnown RBP1.75□□□□□ -2.13
CD44-238ENST00000534296 TMEM54Q969K7 222 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 ECHDC3Q96DC8 303 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 RNF185Q96GF1 192 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 PKNOX2Q96KN3 472 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 ZNF382Q96SR6 550 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 MICU1Q9BPX6 476 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 C20orf24Q9BUV8 137 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 FAIM2Q9BWQ8 316 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 ISYNA1Q9NPH2 558 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 HRASLS2Q9NWW9 162 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 LSM7Q9UK45 103 aaKnown RBP1.75□□□□□ -2.13
CD44-238ENST00000534296 PSG11Q9UQ72 335 aa1.75□□□□□ -2.13
CD44-238ENST00000534296 TET2Q6N021 2002 aaPredicted RBP1.74□□□□□ -2.13
CD44-238ENST00000534296 NSD2O96028 1365 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 MROH7-TTC4A0A0A0MT08 1334 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.74□□□□□ -2.13
CD44-238ENST00000534296 KIR2DL5BA0A0G2JN68 375 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 KIR2DL5BA0A0G2JPC4 375 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 ZNF816-ZNF321PA0A0X1KG74 233 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 A0A1W2PPV9 198 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 ZNF716A6NP11 495 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 SIRPB1O00241 398 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 H6PDO95479 791 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 CST1P01037 141 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 ZNF735P0CB33 412 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 PABPC4LP0CB38 370 aaKnown RBP1.74□□□□□ -2.13
CD44-238ENST00000534296 PRPS2P11908 318 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 CDKN1BP46527 198 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 CX3CR1P49238 355 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 FGF8P55075 233 aaPredicted RBP1.74□□□□□ -2.13
CD44-238ENST00000534296 C21orf59P57076 290 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 RAB10P61026 200 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 STXBP1P61764 594 aaKnown RBP1.74□□□□□ -2.13
CD44-238ENST00000534296 IFT88Q13099 833 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 PPIL2Q13356 520 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 MAB21L1Q13394 359 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 QPRTQ15274 297 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 SHHQ15465 462 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 DEFB116Q30KQ4 102 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 TWF2Q6IBS0 349 aaKnown RBP1.74□□□□□ -2.13
CD44-238ENST00000534296 ANGPTL8Q6UXH0 198 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 SLC25A48Q6ZT89 311 aaKnown RBP1.74□□□□□ -2.13
CD44-238ENST00000534296 LUZP2Q86TE4 346 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 KIR2DL5AQ8N109 375 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 CYB561D1Q8N8Q1 229 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 OR7G2Q8NG99 324 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 OR4C5Q8NGB2 326 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 OR4A4PQ8NGN8 299 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 OR10R2Q8NGX6 335 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 KIR2DL5BQ8NHK3 375 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 RNF139Q8WU17 664 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 KIFAP3Q92845 792 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 CREB3L1Q96BA8 519 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 OR5B12Q96R08 314 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms