RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 TMEM225Q6GV28 225 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 C22orf42Q6IC83 251 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 PLEKHG7Q6ZR37 379 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 GGNQ86UU5 652 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 OR6N2Q8NGY6 317 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 MCFD2Q8NI22 146 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 RPS4Y2Q8TD47 263 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 PNPLA2Q96AD5 504 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 SFXN2Q96NB2 322 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 TMED9Q9BVK6 235 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 CDADC1Q9BWV3 514 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 DEFB127Q9H1M4 99 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 ZDHHC11Q9H8X9 412 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 MRPL22Q9NWU5 206 aaKnown RBP12.64□□□□□ -0.39
CUX1-209ENST00000487284 LIPGQ9Y5X9 500 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 TMEM14AQ9Y6G1 99 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 EPG5Q9HCE0 2579 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 GABRPO00591 440 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 PHYHO14832 338 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 TFECO14948 347 aaPredicted RBP12.63□□□□□ -0.39
CUX1-209ENST00000487284 MAGEB4O15481 346 aaPredicted RBP12.63□□□□□ -0.39
CUX1-209ENST00000487284 GPANK1O95872 356 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 IL1AP01583 271 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 KLK2P20151 261 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 ENTPD1P49961 510 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 AGFG1P52594 562 aaKnown RBP12.63□□□□□ -0.39
CUX1-209ENST00000487284 GFRA1P56159 465 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 GLO1Q04760 184 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 SLC10A1Q14973 349 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 POU4F3Q15319 338 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 ZNF404Q494X3 552 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 RPUSD3Q6P087 351 aaKnown RBP12.63□□□□□ -0.39
CUX1-209ENST00000487284 KCTD20Q7Z5Y7 419 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 Q8NA96 180 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 SYT14Q8NB59 555 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 NOXO1Q8NFA2 376 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 OR6X1Q8NH79 312 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 OTOSQ8NHW6 89 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 PGLYRP3Q96LB9 341 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 KCTD7Q96MP8 289 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 NAA11Q9BSU3 229 aaPredicted RBP12.63□□□□□ -0.39
CUX1-209ENST00000487284 MED18Q9BUE0 208 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 MMP27Q9H306 513 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 ACOXLQ9NUZ1 547 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 GNG8Q9UK08 70 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 GSTK1Q9Y2Q3 226 aa12.63□□□□□ -0.39
CUX1-209ENST00000487284 LINC01387J3KSC0 135 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 RGS9O75916 674 aaPredicted RBP12.62□□□□□ -0.39
CUX1-209ENST00000487284 VAMP5O95183 116 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 CD1AP06126 327 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 PGA4P0DJD7 388 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 PGA3P0DJD8 388 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 PSKH1P11801 424 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 ZNF43P17038 809 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 SOX6P35712 828 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 RPS19P39019 145 aaKnown RBP12.62□□□□□ -0.39
CUX1-209ENST00000487284 OPRL1P41146 370 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 TGM4P49221 684 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 CLDN20P56880 219 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 SIRPAP78324 504 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 FMODQ06828 376 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 CDK5R1Q15078 307 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 ETFDHQ16134 617 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 INAQ16352 499 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 ST3GAL2Q16842 350 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 CCDC58Q4VC31 144 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 RPL22L1Q6P5R6 122 aaKnown RBP12.62□□□□□ -0.39
CUX1-209ENST00000487284 ARL9Q6T311 187 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 RPTNQ6XPR3 784 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 TMEM91Q6ZNR0 172 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 TRILQ7L0X0 811 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 DPY19L4Q7Z388 723 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 GPAT4Q86UL3 456 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 SLC26A10Q8NG04 563 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 OR6Q1Q8NGQ2 317 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 HAVCR2Q8TDQ0 301 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 SLC25A44Q96H78 314 aaPredicted RBP12.62□□□□□ -0.39
CUX1-209ENST00000487284 ADAD1Q96M93 576 aaKnown RBP12.62□□□□□ -0.39
CUX1-209ENST00000487284 DCLRE1CQ96SD1 692 aaKnown RBP12.62□□□□□ -0.39
CUX1-209ENST00000487284 EMC6Q9BV81 110 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 ACKR4Q9NPB9 350 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 LAMP5Q9UJQ1 280 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 COA3Q9Y2R0 106 aaPredicted RBP12.62□□□□□ -0.39
CUX1-209ENST00000487284 GRIP1Q9Y3R0 1128 aa12.62□□□□□ -0.39
CUX1-209ENST00000487284 CACNA1CQ13936 2221 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 HSPB2A8KAH6 182 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 TNFSF11O14788 317 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 KHDRBS3O75525 346 aaKnown RBP12.61□□□□□ -0.39
CUX1-209ENST00000487284 SULT1C4O75897 302 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 WISP2O76076 250 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 ABHD16AO95870 558 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 IGHG1P01857 330 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 HLA-DQA2P01906 255 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 STARP49675 285 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 BMXP51813 675 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 RAC3P60763 192 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 EGR3Q06889 387 aa12.61□□□□□ -0.39
CUX1-209ENST00000487284 MRPL28Q13084 256 aaKnown RBP12.61□□□□□ -0.39
CUX1-209ENST00000487284 DCTN2Q13561 401 aaKnown RBP12.61□□□□□ -0.39
CUX1-209ENST00000487284 HSPB2Q16082 182 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms