RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 DENRO43583 198 aaKnown RBP12.65□□□□□ -0.38
UPF1-211ENST00000600868 SLC16A7O60669 478 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 KHDRBS3O75525 346 aaKnown RBP12.65□□□□□ -0.38
UPF1-211ENST00000600868 SMNDC1O75940 238 aaKnown RBP eCLIP12.65□□□□□ -0.38
UPF1-211ENST00000600868 IGHV3-9P01782 118 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 MYF6P23409 242 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 IL5RAQ01344 420 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 ROR2Q01974 943 aaKnown RBP12.65□□□□□ -0.38
UPF1-211ENST00000600868 FAPQ12884 760 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 OCLNQ16625 522 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 AADACL4Q5VUY2 407 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 MEDAGQ5VYS4 303 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 NXNL2Q5VZ03 156 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 BEND4Q6ZU67 534 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 THAP5Q7Z6K1 395 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 OR6V1Q8N148 313 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 RELL2Q8NC24 303 aaPredicted RBP12.65□□□□□ -0.38
UPF1-211ENST00000600868 TSSK2Q96PF2 358 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 HCAR1Q9BXC0 346 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 OPN3Q9H1Y3 402 aaPredicted RBP12.65□□□□□ -0.38
UPF1-211ENST00000600868 Q9H521 79 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 MED20Q9H944 212 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 CRLF2Q9HC73 371 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 RASSF1Q9NS23 344 aa12.65□□□□□ -0.38
UPF1-211ENST00000600868 IGLV1-36A0A0B4J1U3 117 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 A8MXE2 369 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 PRODHO43272 600 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 SPI1P17947 270 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 AGAP20933 346 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 SLC2A5P22732 501 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 MPGP29372 298 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 SH3BGRP55822 239 aaPredicted RBP12.64□□□□□ -0.39
UPF1-211ENST00000600868 TEKQ02763 1124 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 MAD2L1BPQ15013 274 aaPredicted RBP12.64□□□□□ -0.39
UPF1-211ENST00000600868 P2RY6Q15077 328 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 CEACAM16Q2WEN9 425 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 SLC25A35Q3KQZ1 300 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 SLC35D3Q5M8T2 416 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 ZNF474Q6S9Z5 364 aaPredicted RBP12.64□□□□□ -0.39
UPF1-211ENST00000600868 GID4Q8IVV7 300 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 GABRG1Q8N1C3 465 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 OR9Q1Q8NGQ5 310 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 LILRB4Q8NHJ6 448 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 FBLIM1Q8WUP2 373 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 OTULINQ96BN8 352 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 Q96MT0 163 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 RBM24Q9BX46 236 aaKnown RBP12.64□□□□□ -0.39
UPF1-211ENST00000600868 OR51V1Q9H2C8 321 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 SRA1Q9HD15 236 aaKnown RBP12.64□□□□□ -0.39
UPF1-211ENST00000600868 H2AFY2Q9P0M6 372 aaPredicted RBP12.64□□□□□ -0.39
UPF1-211ENST00000600868 MOKQ9UQ07 419 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 LRRC42Q9Y546 428 aa12.64□□□□□ -0.39
UPF1-211ENST00000600868 HIVEP3Q5T1R4 2406 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 EEF1E1-BLOC1S5C9J1V9 151 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 EEF1E1O43324 174 aaKnown RBP12.63□□□□□ -0.39
UPF1-211ENST00000600868 CLUP10909 449 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 COX5AP20674 150 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 CENPAP49450 140 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 ZNF84P51523 738 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 BLVRAP53004 296 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 TMED1Q13445 227 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 ETFDHQ16134 617 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 FOXL2NBQ6ZUU3 175 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 ZNF627Q7L945 461 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 BCDIN3DQ7Z5W3 292 aaKnown RBP12.63□□□□□ -0.39
UPF1-211ENST00000600868 GLB1L2Q8IW92 636 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 PROKR2Q8NFJ6 384 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 BBS1Q8NFJ9 593 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 APH1BQ8WW43 257 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 NSMAFQ92636 917 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 RFKQ969G6 155 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 ZNF837Q96EG3 531 aaPredicted RBP12.63□□□□□ -0.39
UPF1-211ENST00000600868 ZNF582Q96NG8 517 aaPredicted RBP12.63□□□□□ -0.39
UPF1-211ENST00000600868 RERGLQ9H628 205 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 CLN6Q9NWW5 311 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 TAS2R16Q9NYV7 291 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 DNAJC27Q9NZQ0 273 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 AASSQ9UDR5 926 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 COA3Q9Y2R0 106 aaPredicted RBP12.63□□□□□ -0.39
UPF1-211ENST00000600868 UGT2A1Q9Y4X1 527 aa12.63□□□□□ -0.39
UPF1-211ENST00000600868 SH3D21A4FU49 640 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 SLC22A31A6NKX4 558 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 SNTNA6NMZ2 147 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 ZNF99A8MXY4 864 aaPredicted RBP12.62□□□□□ -0.39
UPF1-211ENST00000600868 ENTPD6O75354 484 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 WBP4O75554 376 aaKnown RBP12.62□□□□□ -0.39
UPF1-211ENST00000600868 GLCEO94923 617 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 GYPBP06028 91 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 ITGA5P08648 1049 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 IGHV1-2P23083 117 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 LAP3P28838 519 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 PYCR1P32322 319 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 ASCL1P50553 236 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 FOXG1P55316 489 aaPredicted RBP12.62□□□□□ -0.39
UPF1-211ENST00000600868 MRPS34P82930 218 aaKnown RBP12.62□□□□□ -0.39
UPF1-211ENST00000600868 TGFBR3Q03167 851 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 GLO1Q04760 184 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 CDK5R2Q13319 367 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 APOFQ13790 326 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 NRN1LQ496H8 165 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms