RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ZNF226Q9NYT6 803 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 MALT1Q9UDY8 824 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 B9D1Q9UPM9 204 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 PRR14LQ5THK1 2151 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 IGKV1D-43A0A0B4J1Z2 117 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 FAM90A27PA6NNH2 459 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 RPL36A-HNRNPH2H7BZ11 118 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 J3QKU1 62 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 KHDRBS3O75525 346 aaKnown RBP10.78□□□□□ -0.68
SDC1-206ENST00000482879 GYPBP06028 91 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 GNAO1P09471 354 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 CTLA4P16410 223 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 MPGP29372 298 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 PYCR1P32322 319 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 CENPAP49450 140 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 ZNF84P51523 738 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 ZNF133P52736 654 aaPredicted RBP10.78□□□□□ -0.68
SDC1-206ENST00000482879 SLC25A1P53007 311 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 FOXG1P55316 489 aaPredicted RBP10.78□□□□□ -0.68
SDC1-206ENST00000482879 SNRPGP62308 76 aaKnown RBP10.78□□□□□ -0.68
SDC1-206ENST00000482879 IL5RAQ01344 420 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 DBPQ10586 325 aaPredicted RBP10.78□□□□□ -0.68
SDC1-206ENST00000482879 IL18R1Q13478 541 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 ETFDHQ16134 617 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 CEACAM16Q2WEN9 425 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 C10orf128Q5T292 105 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 DNM1P34Q6PK57 102 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 XKRXQ6PP77 449 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 OR6V1Q8N148 313 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 FAM26EQ8N5C1 309 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 SETD9Q8NE22 299 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 OR2T4Q8NH00 348 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 CA5BP1Q8WTZ4 195 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 ZNF837Q96EG3 531 aaPredicted RBP10.78□□□□□ -0.68
SDC1-206ENST00000482879 HCAR1Q9BXC0 346 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 NMNAT2Q9BZQ4 307 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 OR51V1Q9H2C8 321 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 RASSF1Q9NS23 344 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 JKAMPQ9P055 326 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 H2AFY2Q9P0M6 372 aaPredicted RBP10.78□□□□□ -0.68
SDC1-206ENST00000482879 COA3Q9Y2R0 106 aaPredicted RBP10.78□□□□□ -0.68
SDC1-206ENST00000482879 FKBP7Q9Y680 259 aa10.78□□□□□ -0.68
SDC1-206ENST00000482879 HCFC1P51610 2035 aa10.77□□□□□ -0.68
SDC1-206ENST00000482879 FAM171A2A8MVW0 826 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 DCTN6O00399 190 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 MPZL2O60487 215 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 CLUP10909 449 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 SPI1P17947 270 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 IGHV1-2P23083 117 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 ARF1P84077 181 aaKnown RBP10.77□□□□□ -0.69
SDC1-206ENST00000482879 P2RY6Q15077 328 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 KLHL12Q53G59 568 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 USP51Q70EK9 711 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 BCDIN3DQ7Z5W3 292 aaKnown RBP10.77□□□□□ -0.69
SDC1-206ENST00000482879 ZBTB46Q86UZ6 589 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 CXorf67Q86X51 503 aaPredicted RBP10.77□□□□□ -0.69
SDC1-206ENST00000482879 ENTHD1Q8IYW4 607 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 C8orf59Q8N0T1 100 aaPredicted RBP10.77□□□□□ -0.69
SDC1-206ENST00000482879 GABRG1Q8N1C3 465 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 ZNF808Q8N4W9 903 aaPredicted RBP10.77□□□□□ -0.69
SDC1-206ENST00000482879 PROKR2Q8NFJ6 384 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 BBS1Q8NFJ9 593 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 OR51L1Q8NGJ5 315 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 RHOXF1Q8NHV9 184 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 ITLN2Q8WWU7 325 aaPredicted RBP10.77□□□□□ -0.69
SDC1-206ENST00000482879 FOXN4Q96NZ1 517 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 SEC61A2Q9H9S3 476 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 DNAJC27Q9NZQ0 273 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 AASSQ9UDR5 926 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 RAB26Q9ULW5 256 aa10.77□□□□□ -0.69
SDC1-206ENST00000482879 RTTNQ86VV8 2226 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 IGLV1-36A0A0B4J1U3 117 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 A0A1W2PPL8 197 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 CIB4A0PJX0 185 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 NKX2-6A6NCS4 301 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 ZNF99A8MXY4 864 aaPredicted RBP10.76□□□□□ -0.69
SDC1-206ENST00000482879 LYZL6O75951 148 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 AGFG2O95081 481 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 ITGA5P08648 1049 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 GABRB1P18505 474 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 AGAP20933 346 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 LAP3P28838 519 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 CDAP32320 146 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 GUCA1AP43080 201 aaPredicted RBP10.76□□□□□ -0.69
SDC1-206ENST00000482879 ASCL1P50553 236 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 ISL1P61371 349 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 RPS7P62081 194 aaKnown RBP10.76□□□□□ -0.69
SDC1-206ENST00000482879 TGFBR3Q03167 851 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 APOFQ13790 326 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 MAD2L1BPQ15013 274 aaPredicted RBP10.76□□□□□ -0.69
SDC1-206ENST00000482879 CDSNQ15517 529 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 STK11Q15831 433 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 SGCAQ16586 387 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 AADACL4Q5VUY2 407 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 NXNL2Q5VZ03 156 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 MEPCEQ7L2J0 689 aaKnown RBP10.76□□□□□ -0.69
SDC1-206ENST00000482879 THAP5Q7Z6K1 395 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 GLB1L2Q8IW92 636 aa10.76□□□□□ -0.69
SDC1-206ENST00000482879 ZNF433Q8N7K0 673 aaPredicted RBP10.76□□□□□ -0.69
SDC1-206ENST00000482879 ZNRF4Q8WWF5 429 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms