RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ROBO4Q8WZ75 1007 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 NOX4Q9NPH5 578 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF226Q9NYT6 803 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 ASH2LQ9UBL3 628 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 HIF3AQ9Y2N7 669 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 DOCK6Q96HP0 2047 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 FIGNL2A6NMB9 653 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 TRAPPC2LH3BP13 241 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 HRKO00198 91 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 TIMM8AO60220 97 aaPredicted RBP6.72□□□□□ -1.33
SYNE1-213ENST00000448038 WNT11O96014 354 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 BDKRB2P30411 391 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 LIPAP38571 399 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 PCBP3P57721 371 aaKnown RBP6.72□□□□□ -1.33
SYNE1-213ENST00000448038 FAPQ12884 760 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF74Q16587 644 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 ISXQ2M1V0 245 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 HYAL4Q2M3T9 481 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 YIF1BQ5BJH7 314 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 CORO6Q6QEF8 472 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 COX15Q7KZN9 410 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 SSX6Q7RTT6 188 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 CREB3L1Q96BA8 519 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 C3orf49Q96BT1 292 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF501Q96CX3 271 aaPredicted RBP6.72□□□□□ -1.33
SYNE1-213ENST00000448038 SCARF2Q96GP6 870 aaPredicted RBP6.72□□□□□ -1.33
SYNE1-213ENST00000448038 ST6GALNAC5Q9BVH7 336 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 COQ3Q9NZJ6 369 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 NLKQ9UBE8 527 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 FBXL3Q9UKT7 428 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 RBMX2Q9Y388 322 aaKnown RBP6.72□□□□□ -1.33
SYNE1-213ENST00000448038 TMEM129A0AVI4 362 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 CTDSP2O14595 271 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF44P15621 663 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 PRKACBP22694 351 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 PTH2RP49190 550 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 PSG6Q00889 435 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF141Q15928 474 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 JMJD6Q6NYC1 403 aaPredicted RBP6.72□□□□□ -1.33
SYNE1-213ENST00000448038 GALNT16Q8N428 558 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 TMEM52Q8NDY8 209 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 CCDC120Q96HB5 630 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 VSTM2LQ96N03 204 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 PDCD1LG2Q9BQ51 273 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 TMEM43Q9BTV4 400 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 PLCXD1Q9NUJ7 323 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 NUDT15Q9NV35 164 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 CLDN12P56749 244 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 NKPD1Q17RQ9 610 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 VASH1Q7L8A9 365 aaPredicted RBP6.72□□□□□ -1.33
SYNE1-213ENST00000448038 TP63Q9H3D4 680 aaPredicted RBP6.72□□□□□ -1.33
SYNE1-213ENST00000448038 ACOXLQ9NUZ1 547 aa6.72□□□□□ -1.33
SYNE1-213ENST00000448038 TRGV5A0A0B4J1U4 118 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 MEIS3P1A6NDR6 274 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 HPP00738 406 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 LINC00271P0C7V0 271 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 TNFSF8P32971 234 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 MYBPHQ13203 477 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 TBC1D28Q2M2D7 210 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 CBLN3Q6UW01 205 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 LRRC28Q86X40 367 aaPredicted RBP6.71□□□□□ -1.33
SYNE1-213ENST00000448038 BEST3Q8N1M1 668 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 M1APQ8TC57 530 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 FGGYQ96C11 551 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 PLA2G12AQ9BZM1 189 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 LUZP4Q9P127 313 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 DUSP13Q9UII6 198 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 PILRAQ9UKJ1 303 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 OR6C65A6NJZ3 312 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 SLC22A20A6NK97 555 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 C21orf140B9A014 251 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 LAP3P28838 519 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 GALNSP34059 522 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 RPS27P42677 84 aaKnown RBP6.71□□□□□ -1.33
SYNE1-213ENST00000448038 B3GNTL1Q67FW5 361 aaPredicted RBP6.71□□□□□ -1.33
SYNE1-213ENST00000448038 CDH24Q86UP0 819 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF321PQ8N8H1 164 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 POGLUT1Q8NBL1 392 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 STEAP2Q8NFT2 490 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 OR11G2Q8NGC1 345 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 TM4SF19Q96DZ7 209 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF681Q96N22 645 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 OR10A4Q9H209 315 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 MMP25Q9NPA2 562 aa6.71□□□□□ -1.33
SYNE1-213ENST00000448038 PCM1Q15154 2024 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 TCRBV16S1A1N1A0A5B0 115 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 OR14I1A6ND48 311 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 FZD7O75084 574 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 RAB3DO95716 219 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 SNRPBP14678 240 aaKnown RBP6.71□□□□□ -1.34
SYNE1-213ENST00000448038 CX3CR1P49238 355 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 MC2RQ01718 297 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 DUSP2Q05923 314 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 FUT7Q11130 342 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 MPEG1Q2M385 716 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 AKIRIN2Q53H80 203 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 ZMAT1Q5H9K5 638 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 MTFR2Q6P444 385 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 PAQR6Q6TCH4 344 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 TMPRSS11FQ6ZWK6 438 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms