RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 KLHL13Q9P2N7 655 aa11.96□□□□□ -0.49
HMGB1-202ENST00000339872 MRM2Q9UI43 246 aaKnown RBP11.96□□□□□ -0.49
HMGB1-202ENST00000339872 IGHV3-15A0A0B4J1V0 119 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 IGKV1D-43A0A0B4J1Z2 117 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 A0A0J9YW62 118 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 SLC35F4A4IF30 521 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 H0YC42 278 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 TACSTD2P09758 323 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 RFC3P40938 356 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 CLRN1P58418 232 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 CSNK2A1P68400 391 aaPredicted RBP11.95□□□□□ -0.5
HMGB1-202ENST00000339872 CAMK2DQ13557 499 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 CCDC58Q4VC31 144 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 IGF2-ASQ6U949 168 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 LRRC69Q6ZNQ3 347 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 KCTD20Q7Z5Y7 419 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 SMURF1Q9HCE7 757 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 PEX16Q9Y5Y5 336 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 SHISA3A0PJX4 238 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 PHYHO14832 338 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 EIF1BO60739 113 aaKnown RBP11.95□□□□□ -0.5
HMGB1-202ENST00000339872 MPZL1O95297 269 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 CALRP27797 417 aaKnown RBP11.95□□□□□ -0.5
HMGB1-202ENST00000339872 CD97P48960 835 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 CAV3P56539 151 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 CLDN20P56880 219 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 H3F3AP84243 136 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 EGR3Q06889 387 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 FAM27D1Q5T7N8 215 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 CARD17Q5XLA6 110 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 HDDC2Q7Z4H3 204 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 CROCCP3Q8IVE0 287 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 NOXO1Q8NFA2 376 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 ABHD4Q8TB40 342 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 KCNE4Q8WWG9 221 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 NSMAFQ92636 917 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 SLC25A44Q96H78 314 aaPredicted RBP11.95□□□□□ -0.5
HMGB1-202ENST00000339872 AMELYQ99218 206 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 PDCD1LG2Q9BQ51 273 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 OR2B2Q9GZK3 357 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 DLL3Q9NYJ7 618 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 CRNNQ9UBG3 495 aaPredicted RBP11.95□□□□□ -0.5
HMGB1-202ENST00000339872 RASD1Q9Y272 281 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 CNTRLQ7Z7A1 2325 aa11.95□□□□□ -0.5
HMGB1-202ENST00000339872 ZFHX2Q9C0A1 2572 aaPredicted RBP11.95□□□□□ -0.5
HMGB1-202ENST00000339872 CNOT1A5YKK6 2376 aaKnown RBP11.95□□□□□ -0.5
HMGB1-202ENST00000339872 A0A075B6Q4 140 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 CENPBD1B2RD01 187 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 EIF1AYO14602 144 aaKnown RBP11.94□□□□□ -0.5
HMGB1-202ENST00000339872 NKX2-8O15522 239 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 RGS5O15539 181 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 KHDRBS3O75525 346 aaKnown RBP11.94□□□□□ -0.5
HMGB1-202ENST00000339872 ABHD16AO95870 558 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 IGHG1P01857 330 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 PGA4P0DJD7 388 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 PGA3P0DJD8 388 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 RRADP55042 308 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 NANOS3P60323 173 aaKnown RBP11.94□□□□□ -0.5
HMGB1-202ENST00000339872 AGAP7PQ5VUJ5 663 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 LIPNQ5VXI9 398 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 CEACAM19Q7Z692 300 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 SULF2Q8IWU5 870 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 UBQLNLQ8IYU4 475 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 MS4A15Q8N5U1 240 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 SLC26A10Q8NG04 563 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 HSD17B8Q92506 261 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 AGAP4Q96P64 663 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 RBP7Q96R05 134 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 UCN2Q96RP3 112 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 NAA11Q9BSU3 229 aaPredicted RBP11.94□□□□□ -0.5
HMGB1-202ENST00000339872 MRPL13Q9BYD1 178 aaKnown RBP11.94□□□□□ -0.5
HMGB1-202ENST00000339872 CTDSP2O14595 271 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 UPK3AO75631 287 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 SULT1C4O75897 302 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 GAAP10253 952 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 ZNF823P16415 610 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 PTGS2P35354 604 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 ACSM3Q53FZ2 586 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 SLC18B1Q6NT16 456 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 OR6X1Q8NH79 312 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 DTNBP1Q96EV8 351 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 TTYH2Q9BSA4 534 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 SRXN1Q9BYN0 137 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 ZNF703Q9H7S9 590 aaPredicted RBP11.94□□□□□ -0.5
HMGB1-202ENST00000339872 SLCO1C1Q9NYB5 712 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 B4GALT7Q9UBV7 327 aa11.94□□□□□ -0.5
HMGB1-202ENST00000339872 MRPS18CQ9Y3D5 142 aaKnown RBP11.94□□□□□ -0.5
HMGB1-202ENST00000339872 LOC102725191A0A1B0GVB3 256 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 IQCMA0A1B0GVH7 501 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 OR5H15A6NDH6 313 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 ZNF726A6NNF4 738 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 SC5DO75845 299 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 NCR1O76036 304 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 SERPINA3P01011 423 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 POU3F2P20265 443 aaPredicted RBP11.93□□□□□ -0.5
HMGB1-202ENST00000339872 CLDN17P56750 224 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 EIF2B1Q14232 305 aaKnown RBP11.93□□□□□ -0.5
HMGB1-202ENST00000339872 THEM4Q5T1C6 240 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 RIF1Q5UIP0 2472 aaKnown RBP11.93□□□□□ -0.5
HMGB1-202ENST00000339872 LRRN1Q6UXK5 716 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms