RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 MAGEB4O15481 346 aaPredicted RBP14.08□□□□□ -0.15
CIITA-204ENST00000570546 SCRG1O75711 98 aa14.08□□□□□ -0.15
CIITA-204ENST00000570546 RPL27P61353 136 aaKnown RBP14.08□□□□□ -0.15
CIITA-204ENST00000570546 SLC36A2Q495M3 483 aa14.08□□□□□ -0.15
CIITA-204ENST00000570546 LHX8Q68G74 356 aa14.08□□□□□ -0.15
CIITA-204ENST00000570546 OPN5Q6U736 354 aa14.08□□□□□ -0.15
CIITA-204ENST00000570546 CA13Q8N1Q1 262 aa14.08□□□□□ -0.15
CIITA-204ENST00000570546 RCBTB1Q8NDN9 531 aa14.08□□□□□ -0.15
CIITA-204ENST00000570546 FBXO24O75426 580 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 PMP2P02689 132 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 SEC61A1P61619 476 aaKnown RBP14.08□□□□□ -0.16
CIITA-204ENST00000570546 PMPCAQ10713 525 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 MLC1Q15049 377 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 AGERQ15109 404 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 SYS1Q8N2H4 156 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 SCARB1Q8WTV0 552 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 TCTEX1D2Q8WW35 142 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 MED30Q96HR3 178 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 SLC25A21Q9BQT8 299 aaPredicted RBP14.08□□□□□ -0.16
CIITA-204ENST00000570546 CDH20Q9HBT6 801 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 CGGBP1Q9UFW8 167 aaPredicted RBP14.08□□□□□ -0.16
CIITA-204ENST00000570546 GIPP09681 153 aaPredicted RBP14.08□□□□□ -0.16
CIITA-204ENST00000570546 PLA2G7Q13093 441 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 BAHD1Q8TBE0 780 aaPredicted RBP14.08□□□□□ -0.16
CIITA-204ENST00000570546 SLC6A18Q96N87 628 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 A0A0B4J203 849 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 ANKRD30BLA7E2S9 258 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 K7EPK0 472 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 CD1CP29017 333 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 FBXL6Q8N531 539 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 FAM71E2Q8N5Q1 922 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 ZFPM2Q8WW38 1151 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 PIGCQ92535 297 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 ELSPBP1Q96BH3 223 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 NRSN2Q9GZP1 204 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 C1orf123Q9NWV4 160 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 NEU3Q9UQ49 428 aa14.08□□□□□ -0.16
CIITA-204ENST00000570546 COA3Q9Y2R0 106 aaPredicted RBP14.08□□□□□ -0.16
CIITA-204ENST00000570546 TGM6O95932 706 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 GABRB1P18505 474 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 GDF1P27539 372 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 ZNF93P35789 620 aaPredicted RBP14.07□□□□□ -0.16
CIITA-204ENST00000570546 FGL2Q14314 439 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 ZNF674Q2M3X9 581 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 YOD1Q5VVQ6 348 aaPredicted RBP14.07□□□□□ -0.16
CIITA-204ENST00000570546 LYSMD4Q5XG99 296 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 OR14K1Q8NGZ2 314 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 SMIM19Q96E16 107 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 TRAPPC4Q9Y296 219 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 A0A087WV62 115 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 AIPO00170 330 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 PCBD1P61457 104 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 MFGE8Q08431 387 aaPredicted RBP14.07□□□□□ -0.16
CIITA-204ENST00000570546 PAPD4Q6PIY7 484 aaKnown RBP14.07□□□□□ -0.16
CIITA-204ENST00000570546 SYT9Q86SS6 491 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 MFSD4AQ8N468 514 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 SUMF2Q8NBJ7 301 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 RSC1A1Q92681 617 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 TCEAL3Q969E4 200 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 TEX101Q9BY14 249 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 ZNF286AQ9HBT8 521 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 EIF4E2O60573 245 aaKnown RBP14.07□□□□□ -0.16
CIITA-204ENST00000570546 SNRNP70P08621 437 aaKnown RBP14.07□□□□□ -0.16
CIITA-204ENST00000570546 SDHAP31040 664 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 CMTM4Q8IZR5 234 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 OR5T1Q8NG75 326 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 OR5D18Q8NGL1 313 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 ARHGDIGQ99819 225 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 KCNE3Q9Y6H6 103 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 PRSS23O95084 383 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 LPLP06858 475 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 POU3F3P20264 500 aaPredicted RBP14.07□□□□□ -0.16
CIITA-204ENST00000570546 MTCP1P56278 107 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 SLC35A1P78382 337 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 EIF2S3LQ2VIR3 472 aaKnown RBP14.07□□□□□ -0.16
CIITA-204ENST00000570546 SLAMF9Q96A28 289 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 ALG14Q96F25 216 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 DCBLD2Q96PD2 775 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 SLC25A31Q9H0C2 315 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 LUZP4Q9P127 313 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 PCDHGA1Q9Y5H4 931 aa14.07□□□□□ -0.16
CIITA-204ENST00000570546 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.06□□□□□ -0.16
CIITA-204ENST00000570546 BLVRBP30043 206 aaPredicted RBP14.06□□□□□ -0.16
CIITA-204ENST00000570546 CTHP32929 405 aa14.06□□□□□ -0.16
CIITA-204ENST00000570546 CSNK1EP49674 416 aaKnown RBP14.06□□□□□ -0.16
CIITA-204ENST00000570546 EMDP50402 254 aa14.06□□□□□ -0.16
CIITA-204ENST00000570546 PGAP1Q75T13 922 aa14.06□□□□□ -0.16
CIITA-204ENST00000570546 OR2L13Q8N349 312 aa14.06□□□□□ -0.16
CIITA-204ENST00000570546 PATE1Q8WXA2 126 aa14.06□□□□□ -0.16
CIITA-204ENST00000570546 CCNL2Q96S94 520 aaPredicted RBP14.06□□□□□ -0.16
CIITA-204ENST00000570546 SMCHD1A6NHR9 2005 aa14.06□□□□□ -0.16
CIITA-204ENST00000570546 BCAT2O15382 392 aaPredicted RBP14.06□□□□□ -0.16
CIITA-204ENST00000570546 ZNF254O75437 659 aa14.06□□□□□ -0.16
CIITA-204ENST00000570546 RAD52P43351 418 aa14.06□□□□□ -0.16
CIITA-204ENST00000570546 LUMP51884 338 aaPredicted RBP14.06□□□□□ -0.16
CIITA-204ENST00000570546 CDK5R1Q15078 307 aa14.06□□□□□ -0.16
CIITA-204ENST00000570546 NPSR1Q6W5P4 371 aa14.06□□□□□ -0.16
CIITA-204ENST00000570546 ESX1Q8N693 406 aa14.06□□□□□ -0.16
CIITA-204ENST00000570546 APH1BQ8WW43 257 aa14.06□□□□□ -0.16
CIITA-204ENST00000570546 HSD17B8Q92506 261 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms