RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 PRR32B1ATL7 298 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 DNPH1O43598 174 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 SULT1C4O75897 302 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 F10P00742 488 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 TGM4P49221 684 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 RRADP55042 308 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 BIDP55957 195 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 CDK5R1Q15078 307 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 OR1C1Q15619 314 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 ETFDHQ16134 617 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 TMEM225Q6GV28 225 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 RPL22L1Q6P5R6 122 aaKnown RBP11.34□□□□□ -0.59
USP3-213ENST00000559711 DNM1P34Q6PK57 102 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 ARL9Q6T311 187 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 RPTNQ6XPR3 784 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 DPY19L4Q7Z388 723 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 YRDCQ86U90 279 aaKnown RBP11.34□□□□□ -0.59
USP3-213ENST00000559711 MS4A15Q8N5U1 240 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 FAM83FQ8NEG4 500 aaPredicted RBP11.34□□□□□ -0.59
USP3-213ENST00000559711 OTOSQ8NHW6 89 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 RPS4Y2Q8TD47 263 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 HAVCR2Q8TDQ0 301 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 SLC25A46Q96AG3 418 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 DTNBP1Q96EV8 351 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 BARHL1Q9BZE3 327 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 MRPL22Q9NWU5 206 aaKnown RBP11.34□□□□□ -0.59
USP3-213ENST00000559711 GALNT8Q9NY28 637 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 GNG8Q9UK08 70 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 BOKQ9UMX3 212 aaPredicted RBP11.34□□□□□ -0.59
USP3-213ENST00000559711 KLHDC2Q9Y2U9 406 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 GRIP1Q9Y3R0 1128 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 DMXL1Q9Y485 3027 aa11.34□□□□□ -0.59
USP3-213ENST00000559711 CNOT1A5YKK6 2376 aaKnown RBP11.34□□□□□ -0.59
USP3-213ENST00000559711 A0A0J9YW62 118 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 CLDN25C9JDP6 229 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 ZNF593O00488 134 aaPredicted RBP11.33□□□□□ -0.6
USP3-213ENST00000559711 PHYHO14832 338 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 SC5DO75845 299 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 RGS9O75916 674 aaPredicted RBP11.33□□□□□ -0.6
USP3-213ENST00000559711 CDRT1O95170 752 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 GPANK1O95872 356 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 TACSTD2P09758 323 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 SDC2P34741 201 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 RORCP51449 518 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 AGFG1P52594 562 aaKnown RBP11.33□□□□□ -0.6
USP3-213ENST00000559711 CSNK2A1P68400 391 aaPredicted RBP11.33□□□□□ -0.6
USP3-213ENST00000559711 GLO1Q04760 184 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 EGR3Q06889 387 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 MRPL28Q13084 256 aaKnown RBP11.33□□□□□ -0.6
USP3-213ENST00000559711 CAMK2BQ13554 666 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 RTP5Q14D33 572 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 ATP1A1-AS1Q5TC04 95 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 LINC00696Q6ZRV3 163 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 ASB18Q6ZVZ8 466 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 HDDC2Q7Z4H3 204 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 MFSD4AQ8N468 514 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 SYT14Q8NB59 555 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 OR2M7Q8NG81 312 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 OR6N2Q8NGY6 317 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 OR6X1Q8NH79 312 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 OR14L1PQ8NHC6 308 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 GHSRQ92847 366 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 BORCS5Q969J3 196 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 RNF166Q96A37 237 aaPredicted RBP11.33□□□□□ -0.6
USP3-213ENST00000559711 SMIM19Q96E16 107 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 SLC25A44Q96H78 314 aaPredicted RBP11.33□□□□□ -0.6
USP3-213ENST00000559711 TTTY10Q9BZA0 68 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 KCNN2Q9H2S1 579 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 CCDC86Q9H6F5 360 aaKnown RBP11.33□□□□□ -0.6
USP3-213ENST00000559711 HMG20AQ9NP66 347 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 SNTG1Q9NSN8 517 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 ACOXLQ9NUZ1 547 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 MRM2Q9UI43 246 aaKnown RBP11.33□□□□□ -0.6
USP3-213ENST00000559711 LAMP5Q9UJQ1 280 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 COA3Q9Y2R0 106 aaPredicted RBP11.33□□□□□ -0.6
USP3-213ENST00000559711 ALPK2Q86TB3 2170 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 CUL9Q8IWT3 2517 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 RAMP1O60894 148 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 KHDRBS3O75525 346 aaKnown RBP11.33□□□□□ -0.6
USP3-213ENST00000559711 VAMP5O95183 116 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 ABHD16AO95870 558 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 ZNF43P17038 809 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 KLK2P20151 261 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 CD97P48960 835 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 SLC3A1Q07837 685 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 INSL4Q14641 139 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 ZNF846Q147U1 533 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 POU4F3Q15319 338 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 TOMM20Q15388 145 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 THEM4Q5T1C6 240 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 AGAP7PQ5VUJ5 663 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 VASH2Q86V25 355 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 CROCCP3Q8IVE0 287 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 ABHD4Q8TB40 342 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 ASB17Q8WXJ9 295 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 AGAP4Q96P64 663 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 RBP7Q96R05 134 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 NAA11Q9BSU3 229 aaPredicted RBP11.33□□□□□ -0.6
USP3-213ENST00000559711 EMC6Q9BV81 110 aa11.33□□□□□ -0.6
USP3-213ENST00000559711 WDR12Q9GZL7 423 aaKnown RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms