RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 OR2L13Q8N349 312 aa12.93□□□□□ -0.34
COL4A3-202ENST00000396578 MRPL22Q9NWU5 206 aaKnown RBP12.93□□□□□ -0.34
COL4A3-202ENST00000396578 HRH3Q9Y5N1 445 aa12.93□□□□□ -0.34
COL4A3-202ENST00000396578 CSAG2Q9Y5P2 127 aa12.93□□□□□ -0.34
COL4A3-202ENST00000396578 CSN1S1P47710 185 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 RAB33AQ14088 237 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 TMEM176BQ3YBM2 270 aaPredicted RBP12.92□□□□□ -0.34
COL4A3-202ENST00000396578 GGTA1PQ4G0N0 100 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 LGI3Q8N145 548 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 ZNF480Q8WV37 535 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 CPPED1Q9BRF8 314 aaPredicted RBP12.92□□□□□ -0.34
COL4A3-202ENST00000396578 TRAPPC2P0DI81 140 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 TRAPPC2BP0DI82 140 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 ELAVL4P26378 380 aaKnown RBP12.92□□□□□ -0.34
COL4A3-202ENST00000396578 SUB1P53999 127 aaKnown RBP eCLIP12.92□□□□□ -0.34
COL4A3-202ENST00000396578 RTP2Q5QGT7 225 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 KCNJ15Q99712 375 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 TPSD1Q9BZJ3 242 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 MED9Q9NWA0 146 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 SLC2A8Q9NY64 477 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 AK3Q9UIJ7 227 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 NOSIPQ9Y314 301 aaKnown RBP12.92□□□□□ -0.34
COL4A3-202ENST00000396578 OR5K3A6NET4 321 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 ZNF732B4DXR9 585 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 S100A8P05109 93 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 SLC35G1Q2M3R5 365 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 OR6K3Q8NGY3 331 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 PIGLQ9Y2B2 252 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 GPR55Q9Y2T6 319 aaPredicted RBP12.92□□□□□ -0.34
COL4A3-202ENST00000396578 C4AP0C0L4 1744 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 C4BP0C0L5 1744 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 RAB5AP20339 215 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 MPPED2Q15777 294 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 VAMP3Q15836 100 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 FXNQ16595 210 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 OPN5Q6U736 354 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 Q6ZPB1 254 aaPredicted RBP12.92□□□□□ -0.34
COL4A3-202ENST00000396578 SYT13Q7L8C5 426 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 OR1M1Q8NGA1 313 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 H7C1C5 153 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 PNPP00491 289 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 HOXA11P31270 313 aaPredicted RBP12.92□□□□□ -0.34
COL4A3-202ENST00000396578 LCN6P62502 163 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 MFAP5Q13361 173 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 CGB2Q6NT52 195 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 LMNTD1Q8N9Z9 388 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 ARNT2Q9HBZ2 717 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 TMX2-CTNND1H3BSU7 103 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 APEX1P27695 318 aaKnown RBP12.92□□□□□ -0.34
COL4A3-202ENST00000396578 CCR9P51686 369 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 DMWDQ09019 674 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 ERV3-1Q14264 604 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 LRRC26Q2I0M4 334 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 SSX7Q7RTT5 188 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 LRRC15Q8TF66 581 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 APH1BQ8WW43 257 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 ZMAT3Q9HA38 289 aaKnown RBP12.92□□□□□ -0.34
COL4A3-202ENST00000396578 A4GALTQ9NPC4 353 aa12.92□□□□□ -0.34
COL4A3-202ENST00000396578 GIPP09681 153 aaPredicted RBP12.91□□□□□ -0.34
COL4A3-202ENST00000396578 CT45A10P0DMU9 189 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 CLDN2P57739 230 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 H3F3AP84243 136 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 TMEM182Q6ZP80 229 aaPredicted RBP12.91□□□□□ -0.34
COL4A3-202ENST00000396578 SLC46A3Q7Z3Q1 461 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 ADGRG3Q86Y34 549 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 NME2P1O60361 137 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 CNIH1O95406 144 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 MFSD9Q8NBP5 474 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 PLPP7Q8NBV4 271 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 OR5B3Q8NH48 314 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 PDLIM5Q96HC4 596 aaKnown RBP12.91□□□□□ -0.34
COL4A3-202ENST00000396578 ZNF816-ZNF321PA0A0X1KG74 233 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 NKX6-3A6NJ46 265 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 OR2F2O95006 317 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 C1QBP02746 253 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 BMP1P13497 986 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 PTTG1IPP53801 180 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 BIDP55957 195 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 OR2F1Q13607 317 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 SLC35D3Q5M8T2 416 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 NAXDQ8IW45 347 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 ZNF321PQ8N8H1 164 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 BPIFCQ8NFQ6 507 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 FGGYQ96C11 551 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 TIMM29Q9BSF4 260 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 SHARPINQ9H0F6 387 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 NTF3P20783 257 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 GABREP78334 506 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 C17orf67Q0P5P2 114 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 FAM3CQ92520 227 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 ATOH8Q96SQ7 321 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 SEMA6CQ9H3T2 930 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 M0QZQ0 153 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 P2RY10O00398 339 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 ITGB8P26012 769 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 RAB13P51153 203 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 PMPCAQ10713 525 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 FAM162BQ5T6X4 162 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 ZNF626Q68DY1 528 aa12.91□□□□□ -0.34
COL4A3-202ENST00000396578 OR51A4Q8NGJ6 313 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms