RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 CTLA4P16410 223 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 GTF2E2P29084 291 aaKnown RBP11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 RORCP51449 518 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 SLC25A1P53007 311 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 GPR85P60893 370 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 POU3F1Q03052 451 aaPredicted RBP11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 PUDPQ08623 228 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 DNASE1L3Q13609 305 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 SLC35D3Q5M8T2 416 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 TIGD4Q8IY51 512 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 FADS6Q8N9I5 356 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 NEIL3Q8TAT5 605 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 ORAI1Q96D31 301 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 NXPE2Q96DL1 559 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 OR5B2Q96R09 309 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 CDC6Q99741 560 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 WDR12Q9GZL7 423 aaKnown RBP11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 TXNIPQ9H3M7 391 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 SDHAF3Q9NRP4 125 aa11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 MRPL39Q9NYK5 338 aaKnown RBP11.45□□□□□ -0.58
VIPAS39-206ENST00000553888 PRSS37A4D1T9 235 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 LIPT2A6NK58 231 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 H3BSH0 61 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 CASKO14936 926 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 HLA-DPB1P04440 258 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 RPS15P62841 145 aaKnown RBP11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 TLE3Q04726 772 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 SSPNQ14714 243 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 CDONQ4KMG0 1287 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 GPR139Q6DWJ6 353 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 DPY19L4Q7Z388 723 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 PARP16Q8N5Y8 322 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 S100ZQ8WXG8 99 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 THAP4Q8WY91 577 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 GHSRQ92847 366 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 DDIT4LQ96D03 193 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 MRGPRX4Q96LA9 322 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 ZPBPQ9BS86 351 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 RHBDL2Q9NX52 303 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 KIAA1549Q9HCM3 1950 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 IGKV1D-43A0A0B4J1Z2 117 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 OR2T1O43869 369 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 HLA-DQA2P01906 255 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 TGM1P22735 817 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 MSX1P28360 303 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 FGF9P31371 208 aaPredicted RBP11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 TCF15Q12870 199 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 EMC4Q5J8M3 183 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 EEF1A1P5Q5VTE0 462 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 SPATC1Q76KD6 591 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 SYT9Q86SS6 491 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 PLCZ1Q86YW0 608 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 FNDC8Q8TC99 324 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 RNF166Q96A37 237 aaPredicted RBP11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 NOX1Q9Y5S8 564 aa11.44□□□□□ -0.58
VIPAS39-206ENST00000553888 ETV2O00321 342 aaPredicted RBP11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 PLPP2O43688 288 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 RGS9O75916 674 aaPredicted RBP11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 WNT11O96014 354 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 IL1AP01583 271 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 TNFSF8P32971 234 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 NANOS3P60323 173 aaKnown RBP11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 TMEM176BQ3YBM2 270 aaPredicted RBP11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 ZMAT1Q5H9K5 638 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 SLC22A10Q63ZE4 541 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 DMKNQ6E0U4 476 aaPredicted RBP11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 H1FNTQ75WM6 255 aaPredicted RBP11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 SLC35D2Q76EJ3 337 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 CROCCP3Q8IVE0 287 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 OR2T4Q8NH00 348 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 MFSD8Q8NHS3 518 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 PAQR8Q8TEZ7 354 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 CPNE5Q9HCH3 593 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 SH2D2AQ9NP31 389 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 CHST11Q9NPF2 352 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 ABCB10Q9NRK6 738 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 KCNG2Q9UJ96 466 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 B9D1Q9UPM9 204 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 GSTK1Q9Y2Q3 226 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 ZNF208O43345 1280 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 TBX1O43435 398 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 CD40LGP29965 261 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 BDH1Q02338 343 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 TGIF1Q15583 401 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 IGSF11Q5DX21 431 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 SLC25A53Q5H9E4 307 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 ATP1A1-AS1Q5TC04 95 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 SLC16A9Q7RTY1 509 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 GPALPP1Q8IXQ4 340 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 BEST3Q8N1M1 668 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 ABHD4Q8TB40 342 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 PSMF1Q92530 271 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 HTRA1Q92743 480 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 ADAD1Q96M93 576 aaKnown RBP11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 FRMD6Q96NE9 622 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 ANGPTL4Q9BY76 406 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 RNF32Q9H0A6 362 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 MUC6Q6W4X9 2439 aa11.43□□□□□ -0.58
VIPAS39-206ENST00000553888 SPENQ96T58 3664 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms