RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 B4DXG7 233 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 SURF4O15260 269 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 SCO1O75880 301 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 SERPINA5P05154 406 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 PTHLHP12272 177 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 ZNF28P17035 718 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 PCMT1P22061 227 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 MAGEB1P43366 347 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 EMDP50402 254 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 SLC26A5P58743 744 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 DUSP8Q13202 625 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 ZNF362Q5T0B9 420 aaPredicted RBP10.74□□□□□ -0.69
SYNPO-204ENST00000519664 TMEM244Q5VVB8 128 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 KIRREL2Q6UWL6 708 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 DPY19L2P2Q6ZN68 376 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 GLB1L2Q8IW92 636 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 OR4Q3Q8NH05 313 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 OR4C3Q8NH37 302 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 APH1BQ8WW43 257 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 ST8SIA4Q92187 359 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 ZNF707Q96C28 371 aaPredicted RBP10.74□□□□□ -0.69
SYNPO-204ENST00000519664 ANKRD19PQ9H560 264 aa10.74□□□□□ -0.69
SYNPO-204ENST00000519664 MRPS2Q9Y399 296 aaKnown RBP10.74□□□□□ -0.69
SYNPO-204ENST00000519664 HOXB5P09067 269 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 SERPINA2P20848 420 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 BIDP55957 195 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 SSX1Q16384 188 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 FAM57BQ71RH2 274 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 SIRT6Q8N6T7 355 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 OR5D14Q8NGL3 314 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 DERL3Q96Q80 235 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 SPACA5Q96QH8 159 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 ARHGAP9Q9BRR9 750 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 HIF3AQ9Y2N7 669 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 CCDC163A0A0D9SF12 145 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 CSF1P09603 554 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 DAP3P51398 398 aaKnown RBP10.73□□□□□ -0.69
SYNPO-204ENST00000519664 FAM69AQ5T7M9 428 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 PPP1R3BQ86XI6 285 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 SLC38A6Q8IZM9 456 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 GTPBP8Q8N3Z3 284 aaPredicted RBP10.73□□□□□ -0.69
SYNPO-204ENST00000519664 PRR18Q8N4B5 295 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 OR52I2Q8NH67 350 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 TCTEX1D2Q8WW35 142 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 OR2M2Q96R28 347 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 PRMT8Q9NR22 394 aaPredicted RBP10.73□□□□□ -0.69
SYNPO-204ENST00000519664 PLEKHJ1Q9NW61 149 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 FLVCR2Q9UPI3 526 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 HRH3Q9Y5N1 445 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 ROS1P08922 2347 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 AKR7A2O43488 359 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 ATP1B1P05026 303 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 PPP1CAP62136 330 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 ALKBH1Q13686 389 aaKnown RBP10.73□□□□□ -0.69
SYNPO-204ENST00000519664 SLC9A3R2Q15599 337 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 OR10K2Q6IF99 312 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 LRRC69Q6ZNQ3 347 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 ZNF546Q86UE3 836 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 C12orf45Q8N5I9 185 aaPredicted RBP10.73□□□□□ -0.69
SYNPO-204ENST00000519664 GOT1L1Q8NHS2 421 aaPredicted RBP10.73□□□□□ -0.69
SYNPO-204ENST00000519664 MFSD8Q8NHS3 518 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 DCUN1D4Q92564 292 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 ZBTB8AQ96BR9 441 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 SEMA4CQ9C0C4 833 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 REV1Q9UBZ9 1251 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 COA3Q9Y2R0 106 aaPredicted RBP10.73□□□□□ -0.69
SYNPO-204ENST00000519664 LSM5Q9Y4Y9 91 aaKnown RBP10.73□□□□□ -0.69
SYNPO-204ENST00000519664 POLEQ07864 2286 aa10.73□□□□□ -0.69
SYNPO-204ENST00000519664 CIB4A0PJX0 185 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 A6NLC8 198 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 EFCAB7A8K855 629 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 AGAP14A8MT82 685 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 H3BUI4 141 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 P2RX6O15547 441 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 ANXA7P20073 488 aaKnown RBP10.72□□□□□ -0.69
SYNPO-204ENST00000519664 EVX1P49640 407 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 GZMKP49863 264 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 TPBGQ13641 420 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 SLC25A35Q3KQZ1 300 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 CAMKMTQ7Z624 323 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 C8orf44Q96CB5 159 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 SLC41A2Q96JW4 573 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 PHB2Q99623 299 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 SMIM3Q9BZL3 60 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 FOXQ1Q9C009 403 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 MCOLN1Q9GZU1 580 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 WDR76Q9H967 626 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 LYRM4Q9HD34 91 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 APMAPQ9HDC9 416 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 ASF1BQ9NVP2 202 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 SRPK3Q9UPE1 567 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 NAP1L6A6NFF2 107 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 H7C417 338 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 TNFRSF10CO14798 259 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 FFAR1O14842 300 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 TNFSF12O43508 249 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 RAB40ALP0C0E4 278 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 SPI1P17947 270 aa10.72□□□□□ -0.69
SYNPO-204ENST00000519664 GPNMBQ14956 572 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms