RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ZAR1LA6NP61 321 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 PYCARD-AS1I3L0S3 204 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 AHCYL1O43865 530 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 TRMUO75648 421 aaKnown RBP13.96□□□□□ -0.17
USP40-206ENST00000443711 KRT33AO76009 404 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 CSNK1A1P48729 337 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 CLRN1P58418 232 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 RUNX1T1Q06455 604 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 SLC35F1Q5T1Q4 408 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 SLX4IPQ5VYV7 408 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 TMEM236Q5W0B7 351 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 ACSM5Q6NUN0 579 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 TFAP2EQ6VUC0 442 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.96□□□□□ -0.17
USP40-206ENST00000443711 ADCK1Q86TW2 530 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 JAZF1Q86VZ6 243 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 LIX1LQ8IVB5 337 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 C20orf196Q8IYI0 205 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 UBE2J2Q8N2K1 259 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 GPR137CQ8N3F9 429 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 ZNF610Q8N9Z0 462 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 FNDC8Q8TC99 324 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 HDAC2Q92769 488 aaKnown RBP13.96□□□□□ -0.17
USP40-206ENST00000443711 RBP7Q96R05 134 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 MBOAT4Q96T53 435 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 ALG12Q9BV10 488 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 MRPL13Q9BYD1 178 aaKnown RBP13.96□□□□□ -0.17
USP40-206ENST00000443711 PRRG3Q9BZD7 231 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 LINC00470Q9BZP3 86 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 B3GAT2Q9NPZ5 323 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 UPB1Q9UBR1 384 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 KLHL21Q9UJP4 597 aa13.96□□□□□ -0.17
USP40-206ENST00000443711 H0YJX3 145 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 MSTNO14793 375 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 CNOT4O95628 575 aaKnown RBP13.95□□□□□ -0.18
USP40-206ENST00000443711 IFNGP01579 166 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 PGA4P0DJD7 388 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 PGA3P0DJD8 388 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 NR2C1P13056 603 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 HIST1H1CP16403 213 aaKnown RBP13.95□□□□□ -0.18
USP40-206ENST00000443711 AGAP20933 346 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 EPHA2P29317 976 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 VHLP40337 213 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.95□□□□□ -0.18
USP40-206ENST00000443711 ITGADQ13349 1161 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 SNCBQ16143 134 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 SLC25A35Q3KQZ1 300 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 MESTQ5EB52 335 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 TSPO2Q5TGU0 170 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 FBXW9Q5XUX1 488 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 XKRXQ6PP77 449 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 BEND4Q6ZU67 534 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 ABHD12BQ7Z5M8 362 aaPredicted RBP13.95□□□□□ -0.18
USP40-206ENST00000443711 MRGPRGQ86SM5 289 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 WDFY1Q8IWB7 410 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 SYT14Q8NB59 555 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 ZNF555Q8NEP9 628 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 NOXO1Q8NFA2 376 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 OR52E2Q8NGJ4 325 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 OR4K13Q8NH42 304 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 LILRB4Q8NHJ6 448 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 TMEM54Q969K7 222 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 PLEKHA8Q96JA3 519 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 SLC38A2Q96QD8 506 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 SNX18Q96RF0 628 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 KCNK17Q96T54 332 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 GRIP2Q9C0E4 1043 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 OPN3Q9H1Y3 402 aaPredicted RBP13.95□□□□□ -0.18
USP40-206ENST00000443711 CMC2Q9NRP2 79 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 SLC7A10Q9NS82 523 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 GLTPQ9NZD2 209 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 PRSS50Q9UI38 385 aa13.95□□□□□ -0.18
USP40-206ENST00000443711 FOXD3Q9UJU5 478 aaPredicted RBP13.95□□□□□ -0.18
USP40-206ENST00000443711 SMG1Q96Q15 3661 aaKnown RBP13.94□□□□□ -0.18
USP40-206ENST00000443711 PRSS37A4D1T9 235 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 RIIAD1A6NNX1 92 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 EEF1E1-BLOC1S5C9J1V9 151 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 DLGAP1O14490 977 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 EEF1E1O43324 174 aaKnown RBP13.94□□□□□ -0.18
USP40-206ENST00000443711 ZG16O60844 167 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 UPK3AO75631 287 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 RENP00797 406 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 IGHV3-9P01782 118 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 EDNRAP25101 427 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 CDKN2AP42771 156 aaKnown RBP13.94□□□□□ -0.18
USP40-206ENST00000443711 CD47Q08722 323 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 HIST3H3Q16695 136 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 C12orf73Q69YU5 71 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 LEG1Q6P5S2 330 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 ZNF808Q8N4W9 903 aaPredicted RBP13.94□□□□□ -0.18
USP40-206ENST00000443711 DHRSXQ8N5I4 330 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 RELL2Q8NC24 303 aaPredicted RBP13.94□□□□□ -0.18
USP40-206ENST00000443711 CA5BP1Q8WTZ4 195 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 HRASLS5Q96KN8 279 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 FAM118AQ9NWS6 357 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 TVP23BQ9NYZ1 205 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 JKAMPQ9P055 326 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 MYO18BQ8IUG5 2567 aa13.94□□□□□ -0.18
USP40-206ENST00000443711 SLC22A23A1A5C7 686 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 A8MXE2 369 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms