RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 DDOQ99489 341 aa9.69□□□□□ -0.86
CUX1-205ENST00000425244 NMNAT2Q9BZQ4 307 aa9.69□□□□□ -0.86
CUX1-205ENST00000425244 OR51J1Q9H342 316 aa9.69□□□□□ -0.86
CUX1-205ENST00000425244 UBQLN4Q9NRR5 601 aa9.69□□□□□ -0.86
CUX1-205ENST00000425244 SPATA2Q9UM82 520 aa9.69□□□□□ -0.86
CUX1-205ENST00000425244 CAMK2AQ9UQM7 478 aa9.69□□□□□ -0.86
CUX1-205ENST00000425244 ZNF281Q9Y2X9 895 aa9.69□□□□□ -0.86
CUX1-205ENST00000425244 NUBP2Q9Y5Y2 271 aa9.69□□□□□ -0.86
CUX1-205ENST00000425244 ZNF318Q5VUA4 2279 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 A0A1B0GTH9 108 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 TRABD2BA6NFA1 517 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 CLPSP04118 112 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 GUSBP08236 651 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 GDNFP39905 211 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 FOXL2P58012 376 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 RPS4XP62701 263 aaKnown RBP9.68□□□□□ -0.86
CUX1-205ENST00000425244 SNTB2Q13425 540 aaKnown RBP9.68□□□□□ -0.86
CUX1-205ENST00000425244 TNK1Q13470 666 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.68□□□□□ -0.864e-6■■□□□ 11.4
CUX1-205ENST00000425244 UBE2NLQ5JXB2 153 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 LINC01590Q5TEZ4 76 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 SFRP4Q6FHJ7 346 aaPredicted RBP9.68□□□□□ -0.86
CUX1-205ENST00000425244 LAMTOR1Q6IAA8 161 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 TMEM71Q6P5X7 295 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 WDR74Q6RFH5 385 aaPredicted RBP9.68□□□□□ -0.86
CUX1-205ENST00000425244 FCRLAQ7L513 359 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 ATG4DQ86TL0 474 aaPredicted RBP9.68□□□□□ -0.86
CUX1-205ENST00000425244 ZNF440Q8IYI8 595 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 OR11H7Q8NGC8 314 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 RGP1Q92546 391 aaPredicted RBP9.68□□□□□ -0.86
CUX1-205ENST00000425244 KTI12Q96EK9 354 aaPredicted RBP9.68□□□□□ -0.86
CUX1-205ENST00000425244 OR6C1Q96RD1 312 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 RAB33BQ9H082 229 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 SCPEP1Q9HB40 452 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 GRHPRQ9UBQ7 328 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 CFAP47Q6ZTR5 3102 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 DCTN6O00399 190 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 YKT6O15498 198 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 ZNF264O43296 627 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 SSNA1O43805 119 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 GPRIN2O60269 458 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 NUDT14O95848 222 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 GPANK1O95872 356 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 CD14P08571 375 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 PNMTP11086 282 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 CXCL3P19876 107 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 ITPKBP27987 946 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 TACR3P29371 465 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 GABRA4P48169 554 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 SPEM2Q0P670 501 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 SKP2Q13309 424 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 LYPD8Q6UX82 237 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 LIX1LQ8IVB5 337 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 OR8K3Q8NH51 312 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 ADAMTS18Q8TE60 1221 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 PTPMT1Q8WUK0 201 aaPredicted RBP9.68□□□□□ -0.86
CUX1-205ENST00000425244 TTC9Q92623 222 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 FOXN4Q96NZ1 517 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 CITED4Q96RK1 184 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 LPAR4Q99677 370 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 GFI1Q99684 422 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.68□□□□□ -0.869e-7■■□□□ 14.3
CUX1-205ENST00000425244 LIN7BQ9HAP6 207 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 MMP25Q9NPA2 562 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 CUTCQ9NTM9 273 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 RCE1Q9Y256 329 aa9.68□□□□□ -0.86
CUX1-205ENST00000425244 IGHV5-10-1A0A0J9YXX1 117 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 IFITM5A6NNB3 132 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 ERVH48-1M5A8F1 160 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 HCRTR2O43614 444 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 H2AFB2P0C5Z0 115 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 PTHLHP12272 177 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 MST1P26927 711 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 CBX5P45973 191 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 CENPAP49450 140 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 LTBQ06643 244 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 RPL18Q07020 188 aaKnown RBP9.67□□□□□ -0.86
CUX1-205ENST00000425244 TCTE1Q5JU00 501 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 HACD4Q5VWC8 232 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 SHISA6Q6ZSJ9 500 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 KCTD20Q7Z5Y7 419 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 DNAAF1Q8NEP3 725 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 OR6N2Q8NGY6 317 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 NAT6Q93015 286 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 SCMH1Q96GD3 660 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 CCDC74BQ96LY2 380 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 HYLS1Q96M11 299 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 ZNF578Q96N58 590 aaPredicted RBP9.67□□□□□ -0.86
CUX1-205ENST00000425244 DPYSL5Q9BPU6 564 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 SLC19A3Q9BZV2 496 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 GHITMQ9H3K2 345 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 FKRPQ9H9S5 495 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 TCF7L1Q9HCS4 588 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 ING1Q9UK53 422 aaPredicted RBP9.67□□□□□ -0.86
CUX1-205ENST00000425244 ING4Q9UNL4 249 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 PCDHGA9Q9Y5G4 932 aaKnown RBP9.67□□□□□ -0.86
CUX1-205ENST00000425244 BLACEA4D250 179 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 C11orf98E9PRG8 122 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 PDCD5O14737 125 aa9.67□□□□□ -0.86
CUX1-205ENST00000425244 GALR2O43603 387 aaPredicted RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms