RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 OR9K2Q8NGE7 335 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 ABTB1Q969K4 478 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 SLC25A44Q96H78 314 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 CNN2Q99439 309 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 MND1Q9BWT6 205 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 SYT4Q9H2B2 425 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 RPRD1BQ9NQG5 326 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 RCE1Q9Y256 329 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 ERGIC3Q9Y282 383 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 RAXQ9Y2V3 346 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 IGF2RP11717 2491 aa13.31□□□□□ -0.28
CCDC88C-202ENST00000334448 IGKV3D-15A0A087WSY6 115 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 ZNF716A6NP11 495 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 H0YC42 278 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 ZNF701M0R085 212 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 TFECO14948 347 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 CXCL13O43927 109 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 CYTIPO60759 359 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 TRMUO75648 421 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 INMTO95050 263 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 PGA4P0DJD7 388 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 PGA3P0DJD8 388 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 NR2C1P13056 603 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 KLK2P20151 261 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 CRABP1P29762 137 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 CAPZA2P47755 286 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 STARP49675 285 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 ZNF133P52736 654 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 RPS3AP61247 264 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 RPS7P62081 194 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 C1DQ13901 141 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 MELKQ14680 651 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 FOXB2Q5VYV0 432 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 DNM1P34Q6PK57 102 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 CREB3L2Q70SY1 520 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 OR6V1Q8N148 313 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 ACBD7Q8N6N7 88 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 RBMXL3Q8N7X1 1067 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 OR4F15Q8NGB8 312 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 OR51G2Q8NGK0 314 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 OR52N1Q8NH53 320 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 OTULINQ96BN8 352 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 TXNDC15Q96J42 360 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 COG8Q96MW5 612 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 MNTQ99583 582 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 RNF122Q9H9V4 155 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 ISYNA1Q9NPH2 558 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 MED29Q9NX70 200 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 TUBD1Q9UJT1 453 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 B9D1Q9UPM9 204 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 LIPGQ9Y5X9 500 aa13.3□□□□□ -0.28
CCDC88C-202ENST00000334448 NCKAP5O14513 1909 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 CACNA1GO43497 2377 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 DCTN6O00399 190 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 AQP7O14520 342 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 AKAP8O43823 692 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 SERPINI2O75830 405 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 ZNF432O94892 652 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 IGHG1P01857 330 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 GYPBP06028 91 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 LCKP06239 509 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 OR2T7P0C7T2 308 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 PTGS2P35354 604 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 EIF1AXP47813 144 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 ETV1P50549 477 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 BIDP55957 195 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 PMP22Q01453 160 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 HSF2Q03933 536 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 WDFY1Q8IWB7 410 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 TIGD4Q8IY51 512 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 PM20D2Q8IYS1 436 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 ZIC4Q8N9L1 334 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 NOXO1Q8NFA2 376 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 OR2T27Q8NH04 317 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 ZNF420Q8TAQ5 688 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 RNF128Q8TEB7 428 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 ZNRF4Q8WWF5 429 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 RELTQ969Z4 430 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 TMIGD2Q96BF3 282 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 ZMYND19Q96E35 227 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 DCBLD2Q96PD2 775 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 UCN2Q96RP3 112 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 PRDM14Q9GZV8 571 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 NUAK2Q9H093 628 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 CHCHD3Q9NX63 227 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 ERVK13-1Q9NX77 482 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 TAS2R16Q9NYV7 291 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 SPRR3Q9UBC9 169 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 CLEC2DQ9UHP7 191 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 B3GNT3Q9Y2A9 372 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 CEPT1Q9Y6K0 416 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 CFAP47Q6ZTR5 3102 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 PTPRQQ9UMZ3 2332 aa13.29□□□□□ -0.28
CCDC88C-202ENST00000334448 FRYQ5TBA9 3013 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 C12orf71A8MTZ7 269 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 H7C1C5 153 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 MYL12BO14950 172 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 TFP02787 698 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 CTLA4P16410 223 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 ATP6V1E1P36543 226 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms