RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 Q8N402 240 aa13.81□□□□□ -0.2
SF3B4-201ENST00000271628 SMAP2Q8WU79 429 aaPredicted RBP13.81□□□□□ -0.2
SF3B4-201ENST00000271628 NXPE2Q96DL1 559 aa13.81□□□□□ -0.2
SF3B4-201ENST00000271628 MNTQ99583 582 aa13.81□□□□□ -0.2
SF3B4-201ENST00000271628 ATF6BQ99941 703 aa13.81□□□□□ -0.2
SF3B4-201ENST00000271628 EDEM2Q9BV94 578 aa13.81□□□□□ -0.2
SF3B4-201ENST00000271628 SIRT4Q9Y6E7 314 aaPredicted RBP13.81□□□□□ -0.2
SF3B4-201ENST00000271628 A0A1W2PRG6 482 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 IGHMP01871 453 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 ADH6P28332 368 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 ACVR1BP36896 505 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 HCCSP53701 268 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 ZP4Q12836 540 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 FOXF1Q12946 379 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 CDK10Q15131 360 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 PLPPR5Q32ZL2 321 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 CCDC58Q4VC31 144 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 PLET1Q6UQ28 207 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 KCTD20Q7Z5Y7 419 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 RPS19BP1Q86WX3 136 aaKnown RBP13.8□□□□□ -0.2
SF3B4-201ENST00000271628 ARMC10Q8N2F6 343 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 DUSP18Q8NEJ0 188 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 ZNF417Q8TAU3 575 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 HAVCR2Q8TDQ0 301 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 ACOT12Q8WYK0 555 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 DNAJA3Q96EY1 480 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 ZNF587Q96SQ5 575 aaPredicted RBP13.8□□□□□ -0.2
SF3B4-201ENST00000271628 ZNF160Q9HCG1 818 aa13.8□□□□□ -0.2
SF3B4-201ENST00000271628 RBFOX1Q9NWB1 397 aaKnown RBP13.8□□□□□ -0.2
SF3B4-201ENST00000271628 FARSAQ9Y285 508 aaKnown RBP13.8□□□□□ -0.2
SF3B4-201ENST00000271628 SELENOFO60613 162 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 HPGDSO60760 199 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 SLC19A2O60779 497 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 SERPINA3P01011 423 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 CD1AP06126 327 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 CELA2AP08217 269 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 PRKAR1AP10644 381 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 APEX1P27695 318 aaKnown RBP13.79□□□□□ -0.2
SF3B4-201ENST00000271628 EIF1P41567 113 aaKnown RBP13.79□□□□□ -0.2
SF3B4-201ENST00000271628 BLVRAP53004 296 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 NUBP1P53384 320 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 CAV3P56539 151 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 RPS15P62841 145 aaKnown RBP13.79□□□□□ -0.2
SF3B4-201ENST00000271628 ACKR1Q16570 336 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 EEF1A1P5Q5VTE0 462 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 DMKNQ6E0U4 476 aaPredicted RBP13.79□□□□□ -0.2
SF3B4-201ENST00000271628 ARL9Q6T311 187 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 TMEM91Q6ZNR0 172 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 H1FNTQ75WM6 255 aaPredicted RBP13.79□□□□□ -0.2
SF3B4-201ENST00000271628 OR6V1Q8N148 313 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 OR2M3Q8NG83 312 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 TSSK2Q96PF2 358 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 CDCP1Q9H5V8 836 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 PCDHGA1Q9Y5H4 931 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 FKBP7Q9Y680 259 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 SMIM30A4D0T7 59 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 CENPBD1B2RD01 187 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 E9PI62 339 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 OGG1O15527 345 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 YES1P07947 543 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 MAP2K3P46734 347 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 SIRPAP78324 504 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 PUDPQ08623 228 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 TP53I3Q53FA7 332 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 RPL22L1Q6P5R6 122 aaKnown RBP13.79□□□□□ -0.2
SF3B4-201ENST00000271628 TMEM156Q8N614 296 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 ASCC1Q8N9N2 400 aaKnown RBP13.79□□□□□ -0.2
SF3B4-201ENST00000271628 OR4K17Q8NGC6 315 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 ZNF519Q8TB69 540 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 ARL5BQ96KC2 179 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 NPAS1Q99742 590 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 SPRY4Q9C004 299 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 SYT4Q9H2B2 425 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 MARCH7Q9H992 704 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 NCDNQ9UBB6 729 aa13.79□□□□□ -0.2
SF3B4-201ENST00000271628 KMT2EQ8IZD2 1858 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 CCDC187A0A096LP49 1063 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 PRSS37A4D1T9 235 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 NPIPB13A6NJU9 1138 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 CD8B2A6NJW9 211 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 FAM171A2A8MVW0 826 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 NPIPB4C9JG80 1138 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 MT-CO3P00414 261 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 TACSTD2P09758 323 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 CD8BP10966 210 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 SLC3A1Q07837 685 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 OR7A5Q15622 319 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 C3orf33Q6P1S2 294 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 PAMR1Q6UXH9 720 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 TIPARPQ7Z3E1 657 aaKnown RBP13.78□□□□□ -0.2
SF3B4-201ENST00000271628 TIGD4Q8IY51 512 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 FADS6Q8N9I5 356 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 ZNF511Q8NB15 262 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 CT55Q8WUE5 264 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 SMIM19Q96E16 107 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 PELI1Q96FA3 418 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 DCLRE1CQ96SD1 692 aaKnown RBP13.78□□□□□ -0.2
SF3B4-201ENST00000271628 VSX1Q9NZR4 365 aaPredicted RBP13.78□□□□□ -0.2
SF3B4-201ENST00000271628 GNG8Q9UK08 70 aa13.78□□□□□ -0.2
SF3B4-201ENST00000271628 COPS3Q9UNS2 423 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms