RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 NKIRAS2Q9NYR9 191 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 OR5V1Q9UGF6 321 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 OR10H1Q9Y4A9 318 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 V9GY05 133 aa14.64□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 M0R296 226 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PEX14O75381 377 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SERPINI2O75830 405 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SEMA4FO95754 770 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SELENOPP49908 381 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SLC25A1P53007 311 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 RPS15P62841 145 aaKnown RBP14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ZNF74Q16587 644 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PWWP2BQ6NUJ5 590 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 HDDC2Q7Z4H3 204 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ATG4DQ86TL0 474 aaPredicted RBP14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 GATSQ8NAP1 163 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MOGAT1Q96PD6 335 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 RXFP3Q9NSD7 469 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MRM2Q9UI43 246 aaKnown RBP14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 FOXJ3Q9UPW0 622 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 HIF3AQ9Y2N7 669 aa14.63□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 NUP210LQ5VU65 1888 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 LINC00862A6NCI5 91 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 H0YC42 278 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 BLOC1S5-TXNDC5H3BN57 136 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 OR8G3PP0DMU2 310 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 LTBQ06643 244 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 FZD2Q14332 565 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CD226Q15762 336 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ARMC6Q6NXE6 501 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 Q6ZTK2 550 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SYT13Q7L8C5 426 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SLC16A9Q7RTY1 509 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 OR6C4Q8NGE1 309 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 LIPHQ8WWY8 451 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 KLK11Q9UBX7 282 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SCP2D1Q9UJQ7 156 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SPAG17Q6Q759 2223 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TMEM72A0PK05 275 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MEN1O00255 615 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SSNA1O43805 119 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 RPP14O95059 124 aaKnown RBP14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ABHD16AO95870 558 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PDGFAP04085 211 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CD14P08571 375 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ADRA2CP18825 462 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PSMB1P20618 241 aaKnown RBP14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 DNASE1P24855 282 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 COL28A1Q2UY09 1125 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SLC6A19Q695T7 634 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 STAC2Q6ZMT1 411 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 NLRC3Q7RTR2 1065 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 DACT3Q96B18 629 aaPredicted RBP14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ZNF436Q9C0F3 470 aaPredicted RBP14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 EMC3Q9P0I2 261 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 KLHL9Q9P2J3 617 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MRPS33Q9Y291 106 aaKnown RBP14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 AUP1Q9Y679 476 aa14.62□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SPTY2D1-AS1A0A0U1RR47 76 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ELOA3DA6NLF2 546 aaPredicted RBP14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PRAMEF26H0Y7S4 382 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 DCTN6O00399 190 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ITGA10O75578 1167 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 KRT33AO76009 404 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MPC2O95563 127 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TGM6O95932 706 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 IGF2P01344 180 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PTHLHP12272 177 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MST1P26927 711 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 EGR4Q05215 589 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ELOA3BQ3SY89 546 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ELFN2Q5R3F8 820 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 WBP2NLQ6ICG8 309 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CBLN3Q6UW01 205 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 THADAQ6YHU6 1953 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CDH24Q86UP0 819 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ZNF440Q8IYI8 595 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ELOA3Q8NG57 546 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SYNPRQ8TBG9 265 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 KLHDC3Q9BQ90 382 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CHRDQ9H2X0 955 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 FKRPQ9H9S5 495 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 GLTPQ9NZD2 209 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 FRRS1LQ9P0K9 344 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TMEM184BQ9Y519 407 aaPredicted RBP14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TRBV5-5A0A0J9YX44 114 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SULT1B1O43704 296 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TMEM127O75204 238 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ECDO95905 644 aaPredicted RBP14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 APEHP13798 732 aaKnown RBP14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 GRK6P43250 576 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 VEGFCP49767 419 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CTXN1P60606 82 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ALKBH1Q13686 389 aaKnown RBP14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 LIPNQ5VXI9 398 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 LRRTM1Q86UE6 522 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 JAZF1Q86VZ6 243 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 LINC00518Q8N0U6 118 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ZDHHC1Q8WTX9 485 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CCDC120Q96HB5 630 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms