RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SLC9A8Q9Y2E8 581 aa11.23□□□□□ -0.61
LINC00339-202ENST00000416769 TENM1Q9UKZ4 2725 aa11.23□□□□□ -0.61
LINC00339-202ENST00000416769 IGHV1-18A0A0C4DH31 117 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 TCRBV3S1A0A5B6 114 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 FAAHO00519 579 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 DYSFO75923 2080 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 PMS2P2O95744 297 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 TGFAP01135 160 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 HOXB6P17509 224 aaKnown RBP11.22□□□□□ -0.61
LINC00339-202ENST00000416769 PGCP20142 388 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 APOBEC3AP31941 199 aaPredicted RBP11.22□□□□□ -0.61
LINC00339-202ENST00000416769 ACAA2P42765 397 aaKnown RBP11.22□□□□□ -0.61
LINC00339-202ENST00000416769 IDH2P48735 452 aaKnown RBP11.22□□□□□ -0.61
LINC00339-202ENST00000416769 PDLIM4P50479 330 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 ACTR3P61158 418 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 H3F3AP84243 136 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 EPS8Q12929 822 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 VHLLQ6RSH7 139 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 LINGO2Q7L985 606 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 VTCN1Q7Z7D3 282 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 COMTD1Q86VU5 262 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 SPATA24Q86W54 205 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 PIGXQ8TBF5 258 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 SLC25A43Q8WUT9 341 aaPredicted RBP11.22□□□□□ -0.61
LINC00339-202ENST00000416769 TMEM234Q8WY98 164 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 HSH2DQ96JZ2 352 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 VRK1Q99986 396 aaPredicted RBP11.22□□□□□ -0.61
LINC00339-202ENST00000416769 MAGIXQ9H6Y5 334 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 SH3GLB1Q9Y371 365 aa11.22□□□□□ -0.61
LINC00339-202ENST00000416769 TMED7-TICAM2A0A0A6YYA0 188 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 ANKRD65E5RJM6 399 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 FMO6PO60774 539 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 SEMG1P04279 462 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 GPIP06744 558 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 CELA3BP08861 270 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 CSF3P09919 207 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 GKN3PP0CG01 181 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 ITGA2P17301 1181 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 CALCRP30988 508 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 RGS8P57771 180 aaPredicted RBP11.21□□□□□ -0.61
LINC00339-202ENST00000416769 CHRNB3Q05901 458 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 SLC17A1Q14916 467 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 FAM98BQ52LJ0 330 aaKnown RBP11.21□□□□□ -0.61
LINC00339-202ENST00000416769 GRINAQ7Z429 371 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 CARM1Q86X55 608 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 DEPDC4Q8N2C3 294 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.21□□□□□ -0.61
LINC00339-202ENST00000416769 TMEM99Q8N816 258 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 OR6T1Q8NGN1 323 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 GEMIN6Q8WXD5 167 aaKnown RBP11.21□□□□□ -0.61
LINC00339-202ENST00000416769 DUS3LQ96G46 650 aaKnown RBP11.21□□□□□ -0.61
LINC00339-202ENST00000416769 C7orf34Q96L11 122 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 WFDC6Q9BQY6 131 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 PIMREGQ9BSJ6 248 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 UPB1Q9UBR1 384 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 OSGIN1Q9UJX0 560 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 TMED7Q9Y3B3 224 aa11.21□□□□□ -0.61
LINC00339-202ENST00000416769 DHRS12A0PJE2 317 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 LYNX1G3V0Z9 82 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 GPR171O14626 319 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 FRS3O43559 492 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 TPST2O60704 377 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 AKR7A3O95154 331 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 IFNW1P05000 195 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 IGFBP1P08833 259 aaPredicted RBP11.2□□□□□ -0.62
LINC00339-202ENST00000416769 LYNX1P0DP58 116 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 UQCRBP14927 111 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 TACR3P29371 465 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 APOBEC1P41238 236 aaKnown RBP11.2□□□□□ -0.62
LINC00339-202ENST00000416769 OR1E2P47887 323 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 COPZ1P61923 177 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 CCNIQ14094 377 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 KPNB1Q14974 876 aaKnown RBP11.2□□□□□ -0.62
LINC00339-202ENST00000416769 TRIP10Q15642 601 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 ADIPOQQ15848 244 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 IQCCQ4KMZ1 466 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 OR7E24Q6IFN5 339 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 SLC46A3Q7Z3Q1 461 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 PIWIL3Q7Z3Z3 882 aaKnown RBP11.2□□□□□ -0.62
LINC00339-202ENST00000416769 RANBP3LQ86VV4 465 aaPredicted RBP11.2□□□□□ -0.62
LINC00339-202ENST00000416769 ADGRG5Q8IZF4 528 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 FAM86B1Q8N7N1 296 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 LSMEM1Q8N8F7 131 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 PAPD5Q8NDF8 572 aaKnown RBP11.2□□□□□ -0.62
LINC00339-202ENST00000416769 OR4D11Q8NGI4 311 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 VANGL1Q8TAA9 524 aaPredicted RBP11.2□□□□□ -0.62
LINC00339-202ENST00000416769 CANT1Q8WVQ1 401 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 ZHX1-C8orf76Q96EF9 292 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 SLC47A1Q96FL8 570 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 ALKBH3Q96Q83 286 aaPredicted RBP11.2□□□□□ -0.62
LINC00339-202ENST00000416769 SEPHS2Q99611 448 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 MCHR1Q99705 422 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 POLR2J2Q9GZM3 115 aaKnown RBP11.2□□□□□ -0.62
LINC00339-202ENST00000416769 POLR2J3Q9H1A7 115 aaKnown RBP11.2□□□□□ -0.62
LINC00339-202ENST00000416769 NELFAQ9H3P2 528 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 DENND2DQ9H6A0 471 aaPredicted RBP11.2□□□□□ -0.62
LINC00339-202ENST00000416769 FKRPQ9H9S5 495 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 TMEM27Q9HBJ8 222 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 IL1RAPQ9NPH3 570 aa11.2□□□□□ -0.62
LINC00339-202ENST00000416769 TESQ9UGI8 421 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms