RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 CMIPQ8IY22 773 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 KLHL36Q8N4N3 616 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 LRRC17Q8N6Y2 441 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CLDN22Q8N7P3 220 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 M1APQ8TC57 530 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SPRYD4Q8WW59 207 aaPredicted RBP11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ADAMTS14Q8WXS8 1223 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TNFRSF13CQ96RJ3 184 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 BEX2Q9BXY8 128 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 COMMD3Q9UBI1 195 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SIGLEC7Q9Y286 467 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GRIP1Q9Y3R0 1128 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RIIAD1A6NNX1 92 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 C12orf71A8MTZ7 269 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 PRR23D1E9PI22 279 aaPredicted RBP11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 BHLHE40O14503 412 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GYPBP06028 91 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 PRR23D2P0DMB1 279 aaPredicted RBP11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ADH7P40394 386 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GALK2Q01415 458 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 COL28A1Q2UY09 1125 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TBRG1Q3YBR2 411 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ARSKQ6UWY0 536 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 FAM131AQ6UXB0 335 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 DTX1Q86Y01 620 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GHDCQ8N2G8 530 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 OR10H4Q8NGA5 316 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SPACA9Q96E40 222 aaPredicted RBP11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 KCTD7Q96MP8 289 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ARHGAP9Q9BRR9 750 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GPR87Q9BY21 358 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TTTY10Q9BZA0 68 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 PAQR5Q9NXK6 330 aaPredicted RBP11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 PLEKHB1Q9UF11 243 aaPredicted RBP11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 VDAC3Q9Y277 283 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 MED13Q9UHV7 2174 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 URB1O60287 2271 aaKnown RBP11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 C21orf140B9A014 251 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 HCN1O60741 890 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SERPINI2O75830 405 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CYC1P08574 325 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 PRKAR1AP10644 381 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CLUP10909 449 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 WT1P19544 449 aaPredicted RBP11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TACR3P29371 465 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 PSPHP78330 225 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 C1QL3Q5VWW1 255 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 NIPAL3Q6P499 406 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ULK3Q6PHR2 472 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TMPRSS11FQ6ZWK6 438 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GID4Q8IVV7 300 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TMEM156Q8N614 296 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TMCO6Q96DC7 493 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 DIRAS2Q96HU8 199 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RNF170Q96K19 258 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 KATNB1Q9BVA0 655 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 METTL7AQ9H8H3 244 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ISG20L2Q9H9L3 353 aaKnown RBP11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CDV3Q9UKY7 258 aaKnown RBP11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TRAPPC4Q9Y296 219 aa11.49□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SPENQ96T58 3664 aaKnown RBP11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 A0A1B0GVC2 190 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 A6NIN4 97 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CD8B2A6NJW9 211 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 FBXO45P0C2W1 286 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CD8BP10966 210 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 IL7P13232 177 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 LIFP15018 202 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 PTGDSP41222 190 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ARMC4Q5T2S8 1044 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RPL13AP3Q6NVV1 102 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 MEPCEQ7L2J0 689 aaKnown RBP11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TMPRSS7Q7RTY8 843 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RAB43Q86YS6 212 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 LNX2Q8N448 690 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SLC37A3Q8NCC5 494 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SLC22A8Q8TCC7 542 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 PSMF1Q92530 271 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SLC25A46Q96AG3 418 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 THOC3Q96J01 351 aaKnown RBP11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 FRMD6Q96NE9 622 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 LAT2Q9GZY6 243 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 DAPL1A0PJW8 107 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 AKAP8O43823 692 aaKnown RBP11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 OPN1LWP04000 364 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CCL3P10147 92 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SDHBP21912 280 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GNG2P59768 71 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CRMP1Q14194 572 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RSPO4Q2I0M5 234 aaPredicted RBP11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TMEM99Q8N816 258 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 OR5M1Q8NGP8 315 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SETD6Q8TBK2 473 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 FBXL2Q9UKC9 423 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GSTK1Q9Y2Q3 226 aa11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CHCHD2Q9Y6H1 151 aaPredicted RBP11.48□□□□□ -0.57
CDK5RAP3-217ENST00000580287 IGKV1D-42A0A075B6H8 117 aa11.47□□□□□ -0.57
CDK5RAP3-217ENST00000580287 NKX2-8O15522 239 aa11.47□□□□□ -0.57
CDK5RAP3-217ENST00000580287 IGHEP01854 428 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms